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bioRxiv · 10.1101/214858

Arteria: An automation system for a sequencing core facility

Dahlberg, J.·Hermansson, J.·Sturlaugsson, S.·Larsson, P.
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Abstract

Arteria is an automation system aimed at sequencing core facilities. It is built on existing open source technologies, with a modular design allowing for a community-driven effort to create plug-and-play micro-services. Herein we describe the Arteria system and elaborate on the underlying conceptual framework. The Arteria system breaks down into three conceptual levels; orchestration, process and execution. At the orchestration level it utilizes an event-based model of automation. It models processes, e.g. the steps involved in processing sequencing data, as workflows and executes these in a micro-service based environment. This creates a system which is both flexible and scalable. The Arteria Project code is available as open source software at http://www.github.com/arteria-project.

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Dahlberg, J., Hermansson, J., Sturlaugsson, S., Larsson, P.. 2017-11-06. Arteria: An automation system for a sequencing core facility. https://doi.org/10.1101/214858

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