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bioRxiv · 10.1101/212654

Enhanced JBrowse plugins for epigenomics data visualization

Hofmeister, B. T.·Schmitz, R. J.
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Abstract

New sequencing techniques require new visualization strategies, as is the case for epigenomics data such as DNA base modifications, small non-coding RNAs, and histone modifications. We present a set of plugins for the genome browser JBrowse that are targeted for epigenomics visualizations. Specifically, we have focused on visualizing DNA base modifications, small non-coding RNAs, stranded read coverage, and sequence motif density. Additionally, we present several plugins for improved user experience such as configurable, high-quality screenshots. In visualizing epigenomics with traditional genomics data, we see these plugins improving scientific communication and leading to discoveries within the field of epigenomics.

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Hofmeister, B. T., Schmitz, R. J.. 2017-11-01. Enhanced JBrowse plugins for epigenomics data visualization. https://doi.org/10.1101/212654

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