Bioconda: A sustainable and comprehensive software distribution for the life sciences

Dale, R.; Grüning, B.; Sjödin, A.; Rowe, J.; Chapman, B. A.; Tomkins-Tinch, C. H.; Valieris, R.; The Bioconda Team,; Köster, J.

doi:10.1101/207092

bioRxiv · 10.1101/207092

Bioconda: A sustainable and comprehensive software distribution for the life sciences

Dale, R.·Grüning, B.·Sjödin, A.·Rowe, J.·Chapman, B. A.·Tomkins-Tinch, C. H.·Valieris, R.·The Bioconda Team,·Köster, J.

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Abstract

We present Bioconda (https://bioconda.github.io), a distribution of bioinformatics software for the lightweight, multiplatform and language-agnostic package manager Conda. Currently, Bioconda offers a collection of over 3000 software packages, which is continuously maintained, updated, and extended by a growing global community of more than 200 contributors. Bioconda improves analysis reproducibility by allowing users to define isolated environments with defined software versions, all of which are easily installed and managed without administrative privileges.

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Dale, R., Grüning, B., Sjödin, A., Rowe, J., Chapman, B. A., Tomkins-Tinch, C. H., Valieris, R., The Bioconda Team,, Köster, J.. 2017-10-21. Bioconda: A sustainable and comprehensive software distribution for the life sciences. https://doi.org/10.1101/207092

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