State-dependent release of extracellular particles with distinct α2,6-sialylation patterns and small RNA cargo related to neuroinflammation

Garcia-Contreras, M.; Lima, C.; Alsop, E.; Kaszala, B.; Meechoovet, B.; Purnell, B.; Jiang, N.; Saftics, A.; Tang, C.; Walsh, O. D.; Holland, S.; Fay, J.; Smith, B.; Sigdel, K. P.; Van Keuren-Jensen, K.; Jovanovic-Talisman, T.; Das, S.

doi:10.1101/2025.10.30.684535

bioRxiv · 10.1101/2025.10.30.684535

State-dependent release of extracellular particles with distinct α2,6-sialylation patterns and small RNA cargo related to neuroinflammation

Garcia-Contreras, M.·Lima, C.·Alsop, E.·Kaszala, B.·Meechoovet, B.·Purnell, B.·Jiang, N.·Saftics, A.·Tang, C.·Walsh, O. D.·Holland, S.·Fay, J.·Smith, B.·Sigdel, K. P.·Van Keuren-Jensen, K.·Jovanovic-Talisman, T.·Das, S.

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Abstract

Neuroinflammation is a significant contributor to neurodegenerative diseases, including Alzheimers disease, Parkinsons disease, and related dementias; yet peripheral biomarkers for neuroinflammation remain an unmet medical need. Microglia, the resident immune cells of the central nervous system, play a dual role in maintaining homeostasis under physiological conditions and driving neuronal damage when chronically dysregulated. One mechanism by which microglia influence their environment is through the release of extracellular vesicles (EVs) and non-vesicular extracellular particles (NVEPs), which can serve as biomarkers the reflect cellular states. Here, we systematically isolated and characterized microglia-derived EVs and NVEPs under pro- and anti-inflammatory conditions and profiled their small RNA cargo by small RNA sequencing. We validated these findings in human iPSC-derived microglia and further recapitulated them in EVs and NVEPs from mouse brain and plasma. Using an engineered mouse model, we were able to isolate plasma microglia-specific EVs in vivo and demonstrated that their RNA cargo reflects their inflammatory state. Importantly, microglial EVs and NVEPs display distinct 2,6-sialylation patterns and small RNA signatures implicated in neurological diseases. These findings demonstrate that microglia-derived EVs and NVEPs cargo reflect microglial cellular state and establish them as putative minimally non-invasive biomarkers of early-stage neurodegenerative diseases.

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Garcia-Contreras, M., Lima, C., Alsop, E., Kaszala, B., Meechoovet, B., Purnell, B., Jiang, N., Saftics, A., Tang, C., Walsh, O. D., Holland, S., Fay, J., Smith, B., Sigdel, K. P., Van Keuren-Jensen, K., Jovanovic-Talisman, T., Das, S.. 2025-10-31. State-dependent release of extracellular particles with distinct α2,6-sialylation patterns and small RNA cargo related to neuroinflammation. https://doi.org/10.1101/2025.10.30.684535

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