Search bioRxiv⌕ Search

bioRxiv · 10.1101/2025.10.28.684574

Dual-Field Interference as a Common Biomechanical Origin of Cell Division, Differentiation, and Aging

Abstract

This work develops a biophysical theory in which a bioelectric field V (x, t) and a cortical stress field{sigma} (x, t) are weakly and reciprocally coupled via an overdamped electromechanical coupler. We show that interference between two fast latent modes produces a measurable slow beat fslow that acts as a tissue-level clock. By sampling the dynamics at "neutral moments"--recurring instants of phase symmetry--we derive a reduced even circle map in which healthy homeostasis corresponds to locking within a specific 2/21 Arnold tongue. We then introduce a coarse-grained dual-field algebra that collapses the continuum description into three effective blocks ({Gamma}, a, b) capturing net electromechanical gain and dissipation. In this algebraic picture, ionic and rheological perturbations are represented as smooth deformations of the parametrization space ({Gamma}, a, b), while the clock variables ({Omega}, fslow, K2) provide experimentally accessible coordinates on those deformations. This construction offers a concrete bridge between molecular-scale regulation and tissue-level mechanics, connecting subcellular control to the emergent seconds-minutes slow clock that constrains division geometry. Evaluating the membrane-potential profile at neutral moments defines a neutral charge-asymmetry observable {Delta}Qn that quantifies left-right voltage imbalance at the division axis and links the slow-phase map to directly measurable bioelectric patterns. The same neutral-map construction admits a rotational interpretation in terms of circle maps and slow precession of the locked orbit: small detunings{delta} from the ideal 2/21 plateau generate a hierarchy of time scales and predict a scaling law Tdev ~ 1/(fslow |{delta}|) relating the fast electromechanical beat to developmental timing. The theory yields four falsifiable predictions. (P1) Homeostatic epithelia exhibit a narrow shared slow-band peak in voltage and stress with high coherence. (P2) The effective forcing and coupling ({Omega}, K2), derived from physical parameters, reside within the 2/21 tongue while avoiding broad low-order resonances. (P3) A weak, frequencyspecific drive at fslow (phase-targeted entrainment) selectively increases coherence and reduces spindle-angle dispersion in unlocked states, providing a physical basis for bioelectric modulation of regenerative dynamics. (P4) Across conditions with comparable fslow, the number of neutral compensation cycles required to complete a phenotypic transition scales inversely with the detuning |{delta}|, linking slow precession of the neutral map to macroscopic developmental time. Ultimately, this framework treats cancer-like instability and senescence-like arrest not as independent pathologies, but as opposite failures of navigation in a single underlying electromechanical cycle, from persistent unlocking to rigid oversynchronization. HighlightsO_LIProposes an overdamped double-oscillator model of tissue electromechanics in which two fast latent modes generate a slow beat (fslow). C_LIO_LILinks the slow beat to an even circle map via neutral moments, identifying a specific 2/21 Arnold tongue that governs stable spindle orientation. C_LIO_LIIntroduces a quantitative dual-field algebra in which ionic (pump-like) and rheological (stiffness-like) perturbations act as deformations of coarse-grained blocks ({Gamma}, a, b), predicting matched shifts in {Omega} and fslow. C_LIO_LIDefines a neutral charge-asymmetry observable {Delta}Qn at neutral moments, recasting the locking scenarios (P1-P3) as constraints on left-right membrane-potential imbalance that can be computed from existing bioelectric models. C_LIO_LIRelates the slow beat to capture kinetics Tlock, linking fast carrier interference to mitotic (minute-scale) timing through progressive synchronization. C_LIO_LIDerives a scaling law (P4) in which the number of neutral compensation cycles required for a phenotypic transition scales inversely with the phase detuning |{delta}|, naturally generating a hierarchy of time scales from minutes to days. C_LIO_LIModels "proliferative unlocking" and "senescent overlock" as opposite dynamical failures of the dual-field clock (drift vs. rigidity), providing a unified view of cancer instability and aging. C_LIO_LIValidates a protocol for phase-targeted entrainment, predicting that a weak drive at fslow selectively recovers coherence and reduces spindle-angle dispersion in unlocked states. C_LI

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Bueno, A. D. M.. 2025-10-30. Dual-Field Interference as a Common Biomechanical Origin of Cell Division, Differentiation, and Aging. https://doi.org/10.1101/2025.10.28.684574

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Scaling of structural variability of ecDNA polymer condensates with copy number boosts and stabilises oncogene regulatory contacts

Extrachromosomal DNAs (ecDNAs) form highly heterogeneous condensates in cancer cells that drive oncogene overexpression, yet how structural variability coexists with stable gene regulation remains unclear. Here, we develop a minimal polymer physics model of MYC-harbouring COLO320-DM ecDNAs, where BRD4-like complexes bind and bridge cognate sites along ecDNA rings. Above a critical binder concentration, ecDNAs phase separate into condensates exhibiting diverse conformations because of their thermodynamic folding degeneracy. Despite this variability, condensates retain conserved interaction scaffolds that give rise to reproducible contact patterns, including in-trans associated domains (I-TADs), genomic regions enriched in intermolecular regulatory contacts between distinct ecDNAs. We find that condensate 3D architecture follows universal scaling relations with ecDNA copy number, n, remaining robust to model parameter changes. Regulatory contacts within I TADs increase linearly with n, yet they are one order of magnitude stronger than in size matched control regions outside I TADs, whereas their relative fluctuations are markedly suppressed as n increases. This scaling produces enhanced, low-noise regulatory environments for oncogenes embedded within I-TADs, such as PVT1-MYC fusions, whereas the canonical MYC copy, located outside, is less amplified as experimentally observed. Our findings reveal universal polymer physics principles underlying ecDNA condensate organization, offering a mechanistic basis for selective oncogene amplification and potential advantages in cancer progression.

biophysics↗

High-resolution mapping of RNA structural maturation during Cas9 assembly with ABEL-FRET

The structural flexibility of RNA is essential for forming ribonucleoprotein (RNP) complexes, which regulate diverse biological processes. This intrinsic property permits RNA to act as a dynamic scaffold along the assembly pathway as it folds into a specific structure for initial recognition by protein and undergoes conformational rearrangements for functional maturation as a complex. Yet, RNA flexibility and RNP multicomponent assembly create significant obstacles for traditional structural methods. To overcome these challenges, we applied recently developed ABEL-FRET spectroscopy to measure tether-free single-molecule Forster resonance energy transfer (smFRET) over extended observation times. Furthermore, ABEL-FRET enables the unique ability for simultaneous measurements of ultrahigh resolution smFRET and hydrodynamic size of individual complexes, which offers distinct advantages for studying dynamic RNA molecules that undergo assembly via sequential binding events. Using ABEL-FRET, we explored how the guide RNA (gRNA) of CRISPR genome editing system folds and modulates its structural flexibility to carry out the roles required for each assembly state from its unbound apo form to the functional Cas9 RNP state for target DNA cleavage. Multi-perspective view of gRNA structure gained by probing its two primary functional domains enabled to capture dramatic changes in gRNA flexibility that are highly dependent on its specific structural domains as well as assembly states. Collectively, our work with ABEL-FRET highlights the intrinsic link between the structural flexibility of RNA and its functionality in RNP assembly.

biophysics↗

De novo design of functional RNAs through higher-order interactions

Designing RNA sequences that reliably adopt functional three-dimensional structures remains a central challenge in RNA engineering because folding depends on cooperative interactions beyond canonical base pairing. Here we present DS3dRNA, an interaction-based framework for de novo RNA sequence design that combines a three-body statistical potential with physics-guided sequence sampling and supports design against multiple conformations. Across the evaluated benchmarks, DS3dRNA outperformed representative RNA inverse-design methods in native-sequence recovery and agreement between predicted and target structures. Energy-sequence-quality analyses further showed that lower design energies generally accompanied higher sequence recovery and macro-averaged F1 scores (MacroF1). Experimentally tested Mango II designs retained high-affinity fluorogenic activity, and five twister ribozyme designs yielded mean endpoint cleavage fractions of 37.7-50.6%, compared with 23.5% for the wild type. These results establish explicit higher-order interaction scoring as a complementary approach to emerging data-driven RNA design methods and provide a framework for designing functional RNAs from experimental or predicted structural ensembles.

biophysics↗