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bioRxiv · 10.1101/2025.10.16.682836

Intracortical microstructure profiling: a versatile method for indexing cortical lamination

Paquola, C.·Royer, J.·Tsigaras, T.·Cabalo, D. G.·Hwang, Y.·Hoffstaedter, F.·Eickhoff, S. B.·Bernhardt, B. C.
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Abstract

Intracortical microstructure profiling represents a powerful, scalable approach for investigating the laminar organisation of the human cortex on both in vivo and post-mortem datasets. Building upon a long tradition of histological analysis, this method leverages surface-based intracortical sampling to generate profiles of tissue properties across cortical depths. The present work outlines a standardised workflow for intracortical microstructural profiling, newly packaged as an open-source toolbox "CortPro" (https://github.com/caseypaquola/cortpro). Here, we explore the utility of central moments as descriptors of profile shape. Using these measures, we quantify (i) the extent to which in vivo MRI can capture laminar differentiation, (ii) the test-retest reliability of profiles, and (iii) their replicability across sites and studies. Our results demonstrate that intracortical profiles are remarkably robust and effectively mitigate bias-field related limitations of non-quantitative MRI. As applications of microstructure-sensitive imaging expand across development, aging, and disease, microstructure profiling provides a principled means of linking microstructural neuroanatomy with systems-level brain organisation.

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Paquola, C., Royer, J., Tsigaras, T., Cabalo, D. G., Hwang, Y., Hoffstaedter, F., Eickhoff, S. B., Bernhardt, B. C.. 2025-10-17. Intracortical microstructure profiling: a versatile method for indexing cortical lamination. https://doi.org/10.1101/2025.10.16.682836

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