Generation of Region-specific Airway Basal Stem Cells from Human Pluripotent Stem Cells via Regulation of BMP-NOGGIN Axis

Suzuki, S.; Acosta Sandoval, N. V.; Doddipalli, S.; Hassan, D. M.; Barilla, C.; Rab, A.; Huang, M.-F.; Avila, J. M.; Tabak, B.; Lu, J.; Derebery, B. C.; Gacha-Garay, M. J.; Winkler, S. L.; Ponnaluri, S. S.; Forcioli-Conti, N.; Rea-Moreno, M.; Chen, Y.-W.; Kim, J.; Lee, C. M.; Nakayama, N.; Li, W.; Mahoney, J. E.; Lee, D.-F.; Sorscher, E. J.; Chen, J.; Davis, B. R.; Huang, S. X.

doi:10.1101/2025.10.01.657190

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bioRxiv · 10.1101/2025.10.01.657190

Generation of Region-specific Airway Basal Stem Cells from Human Pluripotent Stem Cells via Regulation of BMP-NOGGIN Axis

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Abstract

Basal cells (BCs) are the primary stem cell population of adult human airways and a key target for hPSC-based models of airway development, disease and regenerative medicine. Recent studies have revealed substantial regional differences between human proximal and distal airway cell types, including BCs. Here, we show that the NOGGIN-BMP signaling axis governs proximal-distal patterning of hPSC-derived lung progenitors leading to the generation of region-specific induced BCs (iBCs). Continuous BMP inhibition through NOGGIN, coupled with tapered WNT activation, generates proximal iBCs that molecularly and functionally resemble human proximal airway BCs and differentiate in vitro and in vivo into the full repertoire of specialized proximal airway cell types, including ionocytes and pulmonary neuroendocrine cells. In sharp contrast, BMP activation with tapered WNT generates distal airway-like cells and distal BCs with limited ionocyte differentiation potential. Progeny of proximal iBCs derived from G551D CFTR mutant hiPSCs also recapitulate a cystic fibrosis-associated ionocyte phenotype.

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Suzuki, S., Acosta Sandoval, N. V., Doddipalli, S., Hassan, D. M., Barilla, C., Rab, A., Huang, M.-F., Avila, J. M., Tabak, B., Lu, J., Derebery, B. C., Gacha-Garay, M. J., Winkler, S. L., Ponnaluri, S. S., Forcioli-Conti, N., Rea-Moreno, M., Chen, Y.-W., Kim, J., Lee, C. M., Nakayama, N., Li, W., Mahoney, J. E., Lee, D.-F., Sorscher, E. J., Chen, J., Davis, B. R., Huang, S. X.. 2025-10-01. Generation of Region-specific Airway Basal Stem Cells from Human Pluripotent Stem Cells via Regulation of BMP-NOGGIN Axis. https://doi.org/10.1101/2025.10.01.657190

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