Search bioRxiv⌕ Search

bioRxiv · 10.1101/2025.09.29.679270

A systematic literature review of forecasting and predictive models of harmful algal blooms in flowing waters

Abstract

Occurrences of harmful algal blooms (HABs) in rivers challenge the belief that rivers are not susceptible to HABs because of their short residence times and fluctuating hydrology. Here we present a systematic literature review of predictive and forecasting models for HABs in flowing waters, including rivers, flowing in-stream reservoirs (e.g., run-of-river reservoirs and lock-and-dam systems) and tidal or estuarine systems with riverine processes. The review aimed to understand current and historical modeling approaches for predicting and forecasting river HABs, without restricting to specific taxa, such as cyanobacteria, or modeling endpoints. The review included 162 articles published over nearly 50 years, covering more than 80 rivers worldwide. Eutrophic, non-wadable rivers with in-stream obstruction were commonly modeled, though diverse environmental characteristics were reported. Most articles used algal biomass or chlorophyll as modeling endpoints, with a quarter using novel or unique endpoints. Algal toxins motivated model development in 23% of the articles, however just 5% used algal toxins as an endpoint. Only 6% of the articles modeled benthic HABs; the rest focused on pelagic HABs. There was no standard model used for modeling river HABs. Process-based models were more common (59%) than data-driven approaches (37%), with model formulations ranging from simple to complex, which contrasts with a lake-focused literature review of HAB models that found data-driven models were more common. Models in river settings shared similar input variables as those previously identified for lakes, such as water temperature, nutrients, and light availability. However, streamflow and other transport metrics took prominence in river models compared to lake models. Algal cell physiology (such as growth, predation, and motility) was routinely included as input data or as mathematical formulations in process-based models and these processes were frequently identified as an important predictor by the articles authors. Conversely, data-driven models rarely included these processes, instead using predictors related to environmental conditions, such as nutrients, water quality, water temperature, and streamflow. These important proxy predictors have apparent success with modeling overall algal biomass (irrespective of taxa) whereas other factors, such as those related to algal physiology and other biological processes, are likely responsible for more subtle shifts in community composition. These differences highlight the influence of data availability, especially for processes that are difficult, time-consuming, or expensive to measure, on model development and model outcomes, raising questions about the selection of modeling inputs and endpoints. Challenges to advancing river HAB modeling include the lack of site-specific model inputs representing key processes (e.g., photosynthetic parameters and predation rates), overlooked riverine environments like the benthos and side/back-channel areas, lack of information on environmental settings, and poorly reported model performance metrics. This review emphasizes opportunities for advancing river HAB modeling by learning from well-honed estuarine models, supporting current forecasting and operationalization efforts, and developing common datasets for river HAB model development and evaluation.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Murphy, J. C., Gorney, R. M., Lucas, L. A., Zwart, J. A., Graham, J. L.. 2025-10-01. A systematic literature review of forecasting and predictive models of harmful algal blooms in flowing waters. https://doi.org/10.1101/2025.09.29.679270

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Species-composition distributions under competition, ecological drift and immigration

Understanding how species interactions, ecological drift, and immigration jointly shape community composition is a central goal of community ecology. These processes determine not only average community composition, but also how often different community states occur. Here, we ask how competition reshapes the neutral distribution of community composition generated by drift and immigration. We analyze a stochastic two-species competition model with immigration and derive the stationary distribution of relative species composition near neutrality. The stationary distribution shows when communities are usually balanced and when they are instead dominated by one species. Species dominance can become common even when the corresponding deterministic model predicts stable coexistence, particularly in smaller communities. Balanced and dominance states can also occur together, producing a trimodal distribution. Competitive asymmetry further biases the distribution toward the competitively favored species. Thus, the interplay between competition, ecological drift, and immigration determines not only how much community composition varies, but also which community states are most likely to be observed. Our results provide an analytical bridge between neutral and competition theory and a framework for interpreting variation in community composition.

ecology↗

Floristic composition, phenology, and conservation value of four peat bogs in Bucovina, with the presence of Betula nana

This paper presents a comparative analysis of the floristic composition and site characteristics of four peat bogs in Bucovina, Romania: Poiana Stampei, Romanesti, Saru Dornei, and Gaina-Lucina. The research was based on phytosociological releves on 25 msq plots and direct field phenological observations, on six field visits from May to August 2026. Vegetation was characterised using the Braun Blanquet method, and floristic similarity between sites was assessed with the Sorensen and Bray Curtis indices. All four plots shared a common core of taxa characteristic of peatland vegetation: Sphagnum spp., Carex rostrata, Drosera rotundifolia, Eriophorum vaginatum, and Vaccinium species. Species richness was 13 taxa at Poiana Stampei, Romanesti, and Saru Dornei, and 12 at Gaina-Lucina. Romanesti and Saru Dornei showed the highest floristic similarity (descriptive values, not statistically tested, given a single releve per site), while Gaina-Lucina differed most markedly, not through species richness, which was similar across sites, but through species identity and through the presence of Betula nana, a glacial relict absent from the other sites. The results provide a descriptive basis for future research on the floristic composition and conservation of these habitats.

ecology↗

Long-Term Surveillance Reveals Establishment of Aedes albopictus in Eastern Nebraska, USA

Aedes albopictus (Skuse), the Asian tiger mosquito, is a highly competent arboviral vector whose range has expanded substantially across the United States over the past four decades. Despite predictive models placing Nebraska within the species' climatically suitable range, its establishment status in the state has remained poorly characterized. Here, we report results from a nine-year mosquito surveillance program (2017-2025) conducted across 44 Nebraska counties in collaboration with the Nebraska Department of Health and Human Services. Ae. albopictus was detected in five counties, with sustained, annually increasing populations documented in Richardson, Douglas, and Lancaster counties. Richardson County recorded continuous detections during 2017-2025, with proportional representation rising to 60.50% of collected mosquitoes by 2025. In Douglas and Lancaster counties, temporal advancement of first seasonal detection in 2024 and 2025 provide evidence consistent with successful overwintering rather than annual reintroduction. A cumulative degree-day model predicted adult emergence in mid-May across all county-year combinations, consistently preceding trap deployment by two to seven weeks and revealing a systematic early-season surveillance gap. Generalized linear mixed-effects models indicated that trap-level detection persistence, rather than urban location, was the primary predictor of yearly Ae. albopictus positivity, suggesting that current invasion dynamics are driven by focal source populations. These findings provide strong evidence for the establishment of Ae. albopictus in eastern Nebraska and highlight the need for earlier seasonal surveillance and standardized criteria to define establishment in northward-expanding vector populations.

ecology↗