Search bioRxiv⌕ Search

bioRxiv · 10.1101/2025.09.15.676328

Endocytic motif on HIV Env regulates cleavage status and antibody neutralization of cell-free and cell-to-cell infection

Abstract

Antibodies inhibit human immunodeficiency virus type 1 (HIV-1) infection by targeting the envelope glycoprotein (Env). Env cleavage is a key determinant of antibody binding, as cleavage reduces Env flexibility and alters glycosylation. Given the greater abundance of uncleaved Env on the cell surface compared to virions, we investigated whether Env endocytosis, initiated through a membrane-proximal tyrosine motif in its cytoplasmic tail, regulates the abundance of cleaved Env at the cell surface. We hypothesize that such a shift would alter the cleavage and glycosylation profile of cell surface Env, affecting the sensitivity of cell-to-cell infection to neutralizing antibodies. To address this, we generated an endocytic mutant (ASPI-Env) and compared its antigenic properties to a cleavage-site mutant (SEKS-Env). Immunoprecipitation and ratiometric antibody binding studies of cell surface Env demonstrated that the ASPI mutation increases the amount of uncleaved Env on the cell surface. Consequently, ASPI-Env in cell-free infection was more sensitive to NAbs recognizing uncleaved Env. Notably, only b12, which can engage both cleaved and uncleaved Env but has a higher affinity for uncleaved Env, showed increased inhibition of ASPI-Env during cell-to-cell infection. This mirrors the enhanced neutralization of SEKS-Env during the cell-to-cell transfer assay and supports a model in which uncleaved Env participates in CD4-dependent virion transfer. Finally, the ASPI mutation altered lectin binding and differentially affected cell-to-cell and cell-free infections. Together, these findings indicate that Env endocytosis modulates the abundance of cleaved Env at the cell surface, thereby influencing antibody neutralization and lectin recognition in distinct modes of HIV-1 transmission. IMPORTANCEWe find that Env endocytosis modulates the antigenicity of Env on both the cell surface and virions. Blocking internalization increased uncleaved Env on the cell surface, thereby reshaping HIV-1 neutralization due to enhanced binding of antibodies that preferentially recognize uncleaved Env. We further show that uncleaved Env on the cell surface can initiate CD4-dependent transfer of virions across virological synapses. These findings demonstrate that Env endocytosis shapes cleavage-associated antigenicity in a manner that can differentially impact the recognition and neutralization of cells and viruses. The impact of uncleaved Env on neutralization indicates that a broader spectrum of cleaved and uncleaved Env conformations may be relevant when designing vaccines and cure strategies that must contend with a diverse antigenic landscape.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Figueroa Acosta, D. M., Li, H., Chen, B. K.. 2025-09-15. Endocytic motif on HIV Env regulates cleavage status and antibody neutralization of cell-free and cell-to-cell infection. https://doi.org/10.1101/2025.09.15.676328

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

A population-scale landscape of the subgingival microbiome reveals divergent routes to periodontal dysbiosis

Periodontitis is an archetypical mucosal inflammatory disease in which microbiome dysbiosis at the tooth-epithelial interface interacts with host genetic and behavioral risk factors to drive immune-mediated tissue destruction. Although subgingival microbiome compositional shifts are thought to parallel disease severity, microbiome variation at the population-level and its relationship to periodontal clinical phenotypes and disease-modifying factors remain poorly defined. Here, we use unsupervised manifold learning to map the compositional landscape of the subgingival microbiome in 1,355 adults spanning periodontal health to severe periodontitis. We identified eight latent microbiome states organized along a branching continuum from eubiosis to dysbiosis. An intermediate microbial configuration marked ecological destabilization and bifurcation into two distinct periodontitis-associated dysbiotic trajectories, distinguished by links to gingival inflammation and smoking. Although the microbiome trajectories broadly tracked periodontal destruction, a minority of individuals showed discordant microbiome-clinical phenotypes, with some individuals with periodontitis retaining otherwise eubiotic microbiomes enriched for low-abundance pathobionts, while some cases of health or mild disease had highly dysbiotic communities, suggesting distinct host susceptibility. Together, these findings define a population-scale ecological landscape of the subgingival microbiome, reveal divergent trajectories to periodontal dysbiosis, and highlight heterogeneity in the relationship between microbial community structure and clinical disease expression.

microbiology↗

The iron-binding siderophore enterobactin is required for the response of multi-drug resistant Klebsiella pneumoniae to zinc limitation

To persist during infection Klebsiella pneumoniae must overcome nutrient iron and zinc limitation imposed by the host immune system through a process called nutritional immunity. Secreted small molecule siderophores are a major virulence determinant of Klebsiella pneumoniae pathogenesis and are presumed to overcome nutritional immunity by binding iron for bacterial acquisition. In this work, we set out to identify how a multi-drug resistant K. pneumoniae grows in zinc limited environments. Using unbiased transcriptomics, proteomics, and an arrayed transposon screen, we identified that synthesis and uptake of the siderophore enterobactin is required to allow for growth in low zinc conditions. Iron-specific chelators did not replicate this phenotype and addition of supplemental iron through heme in growth media could not complement severe growth defects of enterobactin mutant K. pneumoniae experiencing zinc limitation. Finally, zinc starvation induced enterobactin production independent of the canonical zinc uptake regulator (Zur) transcription factor suggesting an unidentified regulatory mechanism by which Gram-negative pathogens may respond to zinc stress. Together, these studies expand the role of enterobactin beyond iron regulation and highlight a previously unreported link between iron and zinc homeostasis in Klebsiella pneumoniae.

microbiology↗

A microbiota-derived protease links phage susceptibility to host epithelial responses

Bacteriophages are major ecological drivers of gut microbial ecology, yet whether bacterial mechanisms that determine phage susceptibility have consequences for the mammalian host remains poorly understood. Here, we identify dipeptidyl peptidase 11 (Dpp11a), the predominant active serine protease of the prevalent gut commensal Phocaeicola vulgatus, as an unexpected bacterial defence factor. Dpp11a protects against environmental proteases and confers resistance to bacteriophage infection. Metatranscriptomic analyses further reveal increased expression of both dpp11a and P. vulgatus-associated phage transcripts in ulcerative colitis stool samples, indicating that both components of this interaction are transcriptionally active in disease-associated human microbiomes. Using the microfluidic gut-on-a-chip co-culture model HuMiX, we show that the absence of Dpp11 is accompanied by altered epithelial tight-junction remodelling during phage-bacterial infection. Together, our findings reveal that the consequences of bacterial phage defence can extend beyond phage-bacterium interactions to the mammalian epithelium.

microbiology↗