DNA Data Storage Architecture via Ligation of Dynamic DNA Bytes

Jia, L.; Shi, Y.; Yang, J.; Li, S.; Yang, W.; Li, W.; Zhang, M.; Li, Q.; Zhang, Y.; Wang, X.; Li, L.; Duan, B.; Bu, D.; Chen, F.; Liu, H.; Yang, H.; Liu, D.

doi:10.1101/2025.09.15.676197

bioRxiv · 10.1101/2025.09.15.676197

DNA Data Storage Architecture via Ligation of Dynamic DNA Bytes

Jia, L.·Shi, Y.·Yang, J.·Li, S.·Yang, W.·Li, W.·Zhang, M.·Li, Q.·Zhang, Y.·Wang, X.·Li, L.·Duan, B.·Bu, D.·Chen, F.·Liu, H.·Yang, H.·Liu, D.

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Abstract

The explosive growth of digital data is overwhelming conventional storage media, creating an urgent need for more efficient solutions. DNA offers immense potential for digital data storage, yet most systems remain static and archival. Here, we present a modular DNA storage architecture based on dynamic DNA bytes (DynaBytes)-- pre-fabricated DNA segments that can be ligated into reconfigurable information units. Utilizing core, functional and control DynaBytes, we stored 210,776 bits (26,347 bytes) of digital information organized within a file-system, and demonstrated CRUD (Create-Read-Update-Delete)-like operations, hierarchical access and nanopore-based realtime retrieval. Robust data recovery was achieved under [~]100x error-prone sequencing using streamlined error correction and fuzzy decoding. By relying on in vitro ligation of standardized components, DynaBytes reduces cost, scales efficiently, and allows interactive, rewritable storage. These features advance DNA storage beyond passive archiving toward a reconfigurable framework, opening new possibilities for dynamic, practical and large-scale DNA-based data systems.

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Jia, L., Shi, Y., Yang, J., Li, S., Yang, W., Li, W., Zhang, M., Li, Q., Zhang, Y., Wang, X., Li, L., Duan, B., Bu, D., Chen, F., Liu, H., Yang, H., Liu, D.. 2025-09-16. DNA Data Storage Architecture via Ligation of Dynamic DNA Bytes. https://doi.org/10.1101/2025.09.15.676197

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