Cortical-layer EEG-fMRI at 7T: experimental setup and analysis pipeline to elucidate generating mechanisms of alpha oscillations

Marsh, D. C.; Sokoliuk, R.; Aquino, K. M.; Wilson, R.; Pakenham, D. O.; Sanchez Panchuelo, R.; Brookes, M. J.; Hanslmayr, S. C.; Mayhew, S. D.; Francis, S. T.; Mullinger, K. J.

doi:10.1101/2025.09.09.674189

bioRxiv · 10.1101/2025.09.09.674189

Cortical-layer EEG-fMRI at 7T: experimental setup and analysis pipeline to elucidate generating mechanisms of alpha oscillations

Marsh, D. C.·Sokoliuk, R.·Aquino, K. M.·Wilson, R.·Pakenham, D. O.·Sanchez Panchuelo, R.·Brookes, M. J.·Hanslmayr, S. C.·Mayhew, S. D.·Francis, S. T.·Mullinger, K. J.

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Abstract

Alpha band (8-13Hz) electroencephalography (EEG) oscillations play a key role in cognition, but their generating mechanisms are still poorly understood. Most studies investigating laminar origins of alpha oscillations have been conducted on animals using invasive intracranial recordings. To relate these findings to human alpha generation, non-invasive techniques need to be developed. Layer functional Magnetic Resonance Imaging (fMRI) at ultra-high field (UHF, 7T) allows for the interrogation of brain responses across cortical depths and combined with simultaneous EEG, provides the opportunity to gain new insight into human alpha generation mechanisms. This work establishes a framework to study the generating mechanisms of electrophysiological signals non-invasively in humans using simultaneous EEG layer-fMRI. Data were acquired on 10 participants during an eyes closed/eyes open paradigm. We showed that in 9/10 participants the quality of EEG and Blood Oxygenation Level Dependent (BOLD) fMRI data were sufficient to observe a significant negative correlation between EEG alpha power and the BOLD signal in visual cortex grey matter to the eyes open/eyes closed task. "Deveining" was performed to overcome the increase in BOLD signal toward the pial surface due to draining veins, and the effects of each of the steps in the deveining analysis on the cortical depth profiles of the negative alpha-BOLD correlations studied. The largest effect was dependent on the exclusion of voxels in the tissue immediately surrounding veins. Following deveining, the cortical depth profiles showed the negative alpha-BOLD correlations were significantly weaker in the middle depths compared with deep and superficial depths. When a boxcar rather than EEG alpha power was used to model the task, this depth-dependence was not seen, suggesting this was specific to spontaneous alpha-power modulations. In conclusion, we have established a method to non-invasively interrogate the origins of electrophysiological signals. Our alpha-BOLD depth profiles suggest the alpha signal to an eyes open-closed task is generated in superficial and deep layers suggesting top-down processes.

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Marsh, D. C., Sokoliuk, R., Aquino, K. M., Wilson, R., Pakenham, D. O., Sanchez Panchuelo, R., Brookes, M. J., Hanslmayr, S. C., Mayhew, S. D., Francis, S. T., Mullinger, K. J.. 2025-09-10. Cortical-layer EEG-fMRI at 7T: experimental setup and analysis pipeline to elucidate generating mechanisms of alpha oscillations. https://doi.org/10.1101/2025.09.09.674189

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