Development of LYTACs via incorporating a nucleolin-targeting and lysosome-directed aptamer

Abstract

Lysosomal targeting chimeras (LYTACs) represent an emerging class of bifunctional molecules that bridge extracellular target proteins with intrinsic lysosome-targeting receptors (LTRs) on the cell surface, facilitating endocytic internalization and subsequent lysosomal degradation of the targets. However, the therapeutic potential of LYTACs has been limited by the scarcity of suitable intrinsic LTRs. We previously identified an aptamer, SAPT8, that selectively targets nucleolin, a shuttling protein overexpressed on the surface of pathogenic FLSs in rheumatoid arthritis (RA), and induced its lysosomal degradation. In this study, we repurposed SAPT8 as a tumor-targeting and lysosome-directed ligand, leveraging the elevated expression of NCL on tumor cell surfaces. By conjugating SAPT8 with either the c-Met-binding aptamer SL1 or the small molecule inhibitor Tepotinib, we engineered novel LYTACs that demonstrated potent tumor-targeting capability and induced concurrent degradation of both c-Met and NCL, leading to significant antitumor effects. Furthermore, fusion of SAPT8 with VEGFR-2-targeting aptamer Apt02 generated LYTACs that simultaneously degraded VEGFR-2 and NCL, effectively suppressing RA-FLS activity. These results establish SAPT8 as a versatile platform for developing next-generation LYTACs, overcoming current limitations in extracellular protein degradation by circumventing dependence on endogenous LTRs. Graphic Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=69 SRC="FIGDIR/small/672993v1_ufig1.gif" ALT="Figure 1"> View larger version (35K): org.highwire.dtl.DTLVardef@975b74org.highwire.dtl.DTLVardef@f55565org.highwire.dtl.DTLVardef@b9639corg.highwire.dtl.DTLVardef@13aaba7_HPS_FORMAT_FIGEXP M_FIG C_FIG