Search bioRxiv⌕ Search

bioRxiv · 10.1101/2025.08.21.671393

Construction and Functional Characterization of a Heterologous Quorum Sensing Circuit in Clostridium sporogenes

Abstract

Quorum sensing (QS) is a bacterial communication mechanism that regulates gene expression in a population density-dependent manner. Substantial progress has been made in the engineering of QS systems in Gram-negative bacteria, but development of engineered QS systems in Gram positive bacteria remains limited. In this study, obligate anaerobic Gram-positive bacterium Clostridium sporogenes was engineered with the Staphylococcus aureus agr-QS system to enable density-dependent gene regulation. Using LC-MS/MS, we confirmed production of autoinducing peptides in the engineered C. sporogenes strain. A QS-regulated GFP reporter demonstrated activation of expression in response to both exogenous AIP addition and increasing cell density, confirming functional integration of the agr operon. A media refreshment experiment showed that replacing the culture supernatant delayed QS activation, highlighting the importance of signal accumulation. Moreover, we observed that a non-cognate AIP from another agr specificity group acts as a competitive antagonist, inhibiting gene expression under the QS promoter. To our knowledge, this study presents the first successful engineering of the agr quorum sensing system in an obligate anaerobe, expanding the synthetic biology toolkit and offers new opportunities for bacterial therapies and metabolic engineering.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Sadr, S., Zargar, B., Aucoin, M. G., Ingalls, B. P.. 2025-08-22. Construction and Functional Characterization of a Heterologous Quorum Sensing Circuit in Clostridium sporogenes. https://doi.org/10.1101/2025.08.21.671393

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

A High-Efficiency Geranylation Platform Enabled by Rational Tuning of a Single-Residue-Coded Chemo- and Regioselective Switch in Aromatic Prenyltransferases

Geranylation is an efficient post-modification strategy for enhancing or introducing new properties to molecules; however, achieving both high efficiency and precision remains challenging. Aromatic prenyltransferases (PTs) provide a mild and sustainable approach, yet their practical application is often limited by the trade-off between broad substrate scope and low selectivity, and successfully balancing these properties is rare. Here, using the pharmaceutically relevant cannabigerol framework as a model, we identify a single-residue switch in a prenyltransferase from Aspergillus terreus (AtaPT) that governs both chemo- and regioselectivity. Rational tuning of this switch preserves broad substrate scope while enhancing selectivity, enabling the selective formation of each of the three possible mono-geranylated products in the model reaction. Structural analysis reveals that this residue modulates the selectivity and activity through coupled steric and electrostatic effects. Notably, transplantation of this site into three homologous PTs similarly reprogrammed selectivity, establishing a conserved and generalizable control mechanism. Leveraging these insights, we achieved selective geranylation across 36 aromatic substrates, affording 41 products. Integration with an efficient geranyl donor regeneration system enabled preparative-scale synthesis, reaching titers up to 324 mg/L. This work defines a unifying mechanism for selectivity control in PTs and provides a high-efficiency platform for geranylation.

synthetic biology↗

Programmable interphyla communication for Staphylococcus aureus by transferability of homoserine lactone sensors between Bacillales bacteria

Staphylococcus aureus is a Gram-positive opportunistic pathogen of the order Bacillales and a frequent member of human-associated microbiomes. Despite its clinical relevance, engineering S. aureus and the communities it inhabits remains limited by a shortage of well-characterized genetic tools for precise control of gene expression and intercellular signaling. Biosensors for homoserine lactones (HSLs) are widely used in Gram-negative bacteria, as HSLs are small, passively diffusible signaling molecules for and their sensors are tightly regulated. Here, we show that synthetically designed HSL sensors using LuxR-family regulators are highly functional in S. aureus. Notably, synthetic designs previously built for the Gram-positive model Bacillus subtilis, a distantly related Bacillales, transferred functionally and establish repurposing the genetic toolbox as an effective strategy for importing these functions into S. aureus. Sensor performance correlated strongly between the two Bacillales, and activation in S. aureus reached 55-fold, exceeding the dynamic range of reported inducible systems. We further demonstrate tightly regulated, programmable interphyla communication between Gram-negative Escherichia coli and S. aureus via HSL signaling. These results provide a new toolset for engineering interbacterial communication and open a route to extending programmable HSL signaling to other tough-to-engineer bacteria.

synthetic biology↗

DIALECT: DNA-Programmable Synthetic Cells Communicate with Mammalian Cells through Synthetic Receptors

Synthetic cells can regulate mammalian signalling through the controlled release of diffusible protein ligands, but coupling programmable synthetic-cell senders to orthogonal, engineered mammalian receptors remains challenging. Here we present DIALECT (DNA-Instructed Assembly of Ligands for Engineered Cellular Transduction), a platform in which proteinosome-based synthetic cells translate sequence-defined DNA inputs into coiled-coil signalling ligand outputs for engineered mammalian receptors. DNA-ligand conjugates are localized within semipermeable proteinosomes through DNA hybridization and released by toehold-mediated DNA strand displacement (TMSD). The released ligands diffuse to neighbouring mammalian cells and activate cognate CC-GEMS receptors, inducing JAK/STAT3 signalling and reporter activation, with a higher response in cognate than non-cognate receiver cells under activation conditions. We further implement distributed Boolean AND logic using two independently programmed proteinosome populations that respond to distinct DNA inputs and release complementary ligand components. Simultaneous addition of both inputs produces substantially higher reporter activity than the respective single-input conditions, consistent with extracellular assembly of an active receptor agonist. DIALECT thus establishes a modular interface linking DNA-based molecular computation in synthetic cells to orthogonal signalling pathways in mammalian cells, providing a foundation for hybrid artificial-biological communication networks.

synthetic biology↗