Plant Cell Wall Enzymatic Hydrolysis: Predicting Yield Dynamics from Autofluorescence and Morphological Temporal Changes

Hossein Khani, S.; OULD AMER, K.; Shiasi Ghalemaleki, F.; Corre, M.; Remy, N.; Habrant, A.; Lebas, B.; Massah, J.; Faraj, A.; Paës, G.; Refahi, Y.

doi:10.1101/2025.08.11.669614

bioRxiv · 10.1101/2025.08.11.669614

Plant Cell Wall Enzymatic Hydrolysis: Predicting Yield Dynamics from Autofluorescence and Morphological Temporal Changes

Hossein Khani, S.·OULD AMER, K.·Shiasi Ghalemaleki, F.·Corre, M.·Remy, N.·Habrant, A.·Lebas, B.·Massah, J.·Faraj, A.·Paës, G.·Refahi, Y.

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Abstract

Enzymatic hydrolysis of plant cell walls into fermentable sugars is a critical step in biotechnological conversion, yet efficiency is limited by cell wall recalcitrance. Predicting conversion yields of cell wall-derived sugars during hydrolysis is challenging due to the complex underlying mechanisms and the labor-intensive nature of conventional assays. This study introduces an innovative pipeline that accurately quantifies cell wall autofluorescence intensity and morphological descriptors during enzymatic hydrolysis. The pipeline incorporates a novel adaptive drift compensation strategy which dynamically adjusts to the progression and extent of deconstruction ensuring robust analysis. Applied to time-lapse images of spruce wood enzymatic deconstruction, the pipeline revealed strong negative correlations of conversion yields during hydrolysis with both the dynamics of cell wall autofluorescence intensity and morphological descriptors. Phase-specific analysis uncovered distinct correlation patterns dependent on hydrolysis stage and sugar type. This non-destructive pipeline eliminates the need for extensive sampling and time-consuming chemical assays, establishing plant cell wall autofluorescence and morphological descriptors as accurate predictive real-time biomarkers of dynamics of sugar conversion yields. The findings provide a framework for accelerating the development of optimized biotechnological conversion processes.

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Hossein Khani, S., OULD AMER, K., Shiasi Ghalemaleki, F., Corre, M., Remy, N., Habrant, A., Lebas, B., Massah, J., Faraj, A., Paës, G., Refahi, Y.. 2025-08-13. Plant Cell Wall Enzymatic Hydrolysis: Predicting Yield Dynamics from Autofluorescence and Morphological Temporal Changes. https://doi.org/10.1101/2025.08.11.669614

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