Fish Show Genetic Evolutionary Responses to River Regulation

Cai, X.; Deflem, I.; Rennie, C. D.; De Meester, J.; Willems, P.; Hendry, A. P.; Calboli, F. C. F.; Hellemans, B.; Volckaert, F. A. M.; Raeymaekers, J. A. M.

doi:10.1101/2025.08.01.668107

bioRxiv · 10.1101/2025.08.01.668107

Fish Show Genetic Evolutionary Responses to River Regulation

Cai, X.·Deflem, I.·Rennie, C. D.·De Meester, J.·Willems, P.·Hendry, A. P.·Calboli, F. C. F.·Hellemans, B.·Volckaert, F. A. M.·Raeymaekers, J. A. M.

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Abstract

Eco-hydraulics traditionally aims at managing riverine systems in a semi-natural state while meeting human demands, assuming aquatic species are static. However, evidence of rapid evolution suggests that ignoring evolutionary dynamics of fish species might limit long-term effectiveness of eco-hydraulics frameworks. It remains unclear how freshwater fish adapt to human perturbation. Why are some fish populations more resilient to human perturbation than others? What are the genetic mechanisms behind it? To answer these questions, we genotyped eleven populations of three-spined stickleback in a regulated river system and collected data on river morphology, connectivity, flow regimes, physico-chemistry and parasite abundance through a combination of field surveys and modelling. Gene-environment association analysis detected strong signals of genetic divergence associated with hydraulic features. Gene ontology analysis revealed evolutionary responses that primarily involve functions in the nervous and sensory systems. These findings demonstrate that fish can evolve in response to river regulation, highlighting the need to transition from eco-hydraulics toward eco-evo-hydraulics.

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Cai, X., Deflem, I., Rennie, C. D., De Meester, J., Willems, P., Hendry, A. P., Calboli, F. C. F., Hellemans, B., Volckaert, F. A. M., Raeymaekers, J. A. M.. 2025-08-02. Fish Show Genetic Evolutionary Responses to River Regulation. https://doi.org/10.1101/2025.08.01.668107

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