Molecular signature of human endometrial stem/progenitor cells at the single cell level

Fitzgerald, H. C.; Mortlock, S.; Filby, C. E.; Cousins, F. L.; Marquez-Garcia, E.; Wyatt, K. A.; McKinnon, B.; Rombauts, L.; Tsaltas, J.; Montgomery, G. W.; Gargett, C. E.

doi:10.1101/2025.06.23.660982

bioRxiv · 10.1101/2025.06.23.660982

Molecular signature of human endometrial stem/progenitor cells at the single cell level

Fitzgerald, H. C.·Mortlock, S.·Filby, C. E.·Cousins, F. L.·Marquez-Garcia, E.·Wyatt, K. A.·McKinnon, B.·Rombauts, L.·Tsaltas, J.·Montgomery, G. W.·Gargett, C. E.

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Abstract

Human endometrium sheds and regenerates each month during the menstrual cycle. N-cadherin+ (CDH2) glandular epithelial progenitors and SUSD2+ MSC and their niches have been identified but their signaling interactions remain unknown. SSEA1+ epithelial cells resurface the endometrium generating a new luminal epithelium each cycle. Based on these markers, we characterised the gene expression of human endometrial stem/progenitor cell-enriched populations derived from FACSorted hysterectomy endometrium by scRNAseq. Two of 10 epithelial clusters contained CDH2+SOX9+ cells with high TRH and IHH expression. N-cadherin and IHH, and SSEA1 and Hedgehog coreceptor BOC immunocolocalised in the basal layer of endometrial glands from which the new functional layer glands regenerate each menstrual cycle. Two of six mesenchymal clusters contained SUSD2+ MSC, one with high MUSTN1 expression. Epithelial progenitors and endometrial MSC transitioned to their respective progeny. We provide new insights into human endometrial stem/progenitor cell signaling pathways and niche interactions regulating their function. HighlightsO_LIEnriching cell suspensions of human endometrial cells from hysterectomy tissues with CDH2+ epithelial progenitors, SSEA-1+ basalis epithelial cells and SUSD2+ perivascular MSC enabled their gene profiling at the single cell level. C_LIO_LIMultiple cell fate trajectory analyses showed that CDH2+SOX9+ epithelial cells and SUSD2+MYH11+MCAM+MUSTN1+ MSC are the progenitors for human endometrial glandular and luminal epithelial cells, and stromal vascular cells, respectively. C_LIO_LIEnriched TRH expression in human endometrial epithelial progenitors suggests a role in their progenitor function. C_LIO_LIInteraction between IHH of SOX9+ human endometrial epithelial progenitors with basalis fibroblasts and decidualized stroma and co-receptor BOC suggests IHH signalling may have a role in basalis epithelial migration to repair the luminal epithelium during menses. C_LI eTOC blurbGargett and colleagues provide a molecular signature of human endometrial stem/progenitor cells by enriching 4 stem/progenitor populations from hysterectomies using known markers for scRNAseq analysis. The two epithelial and two MSC progenitor states identified transitioned to their differentiated progeny. IHH was validated as a key signalling molecule of epithelial progenitors in basal glands that interacted with BOC co-receptors.

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Fitzgerald, H. C., Mortlock, S., Filby, C. E., Cousins, F. L., Marquez-Garcia, E., Wyatt, K. A., McKinnon, B., Rombauts, L., Tsaltas, J., Montgomery, G. W., Gargett, C. E.. 2025-06-27. Molecular signature of human endometrial stem/progenitor cells at the single cell level. https://doi.org/10.1101/2025.06.23.660982

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