Integrative Structure of Norovirus NS3 Suggests a Role in RNA Transport

Haas, M.; Mills, J. T.; Kelley, C.; Das, A.; Hof, H.; Niemel, C.; Donselaar, T.; Drulyte, I.; van Kuppeveld, F. J. M.; Dulin, D.; Snijder, J.; Herod, M. R.; Hurdiss, D. L.

doi:10.1101/2025.06.17.659504

bioRxiv · 10.1101/2025.06.17.659504

Integrative Structure of Norovirus NS3 Suggests a Role in RNA Transport

Haas, M.·Mills, J. T.·Kelley, C.·Das, A.·Hof, H.·Niemel, C.·Donselaar, T.·Drulyte, I.·van Kuppeveld, F. J. M.·Dulin, D.·Snijder, J.·Herod, M. R.·Hurdiss, D. L.

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Abstract

Human noroviruses (HuNoVs) are the leading global cause of non-bacterial gastroenteritis, yet no vaccines or antiviral therapies are currently approved1. The viral non-structural protein NS3 is a membrane-bound AAA+ ATPase of superfamily 3 (SF3) with multiple proposed roles in the norovirus replication cycle. However, the structure of NS3, and the mechanisms by which it contributes to genome replication and membrane remodeling, have remained unknown. We engineered a soluble, hexameric, and catalytically active form of NS3 and determined its cryo-EM structure in the presence of a nucleotide analogue at 2.9 [A] resolution. The structure adopts a split lock-washer architecture characteristic of AAA+ motors that operate via a hand-over-hand translocation mechanism2. Modeling of the nucleotide-binding site reveals conserved features governing ATP binding and hydrolysis. Using integrative modeling with AlphaFold3, we generated a full-length, membrane-associated model of NS3, in which an N-terminal transmembrane domain, central helical bundle, and AAA+ motor form a continuous conduit. This model supports a role for NS3 as a candidate membrane-spanning RNA translocase that couples ATP hydrolysis to genome movement. This structural framework helps address long-standing gaps in our understanding of norovirus replication and establishes a basis for mechanistic studies and structure-guided antiviral design.

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Haas, M., Mills, J. T., Kelley, C., Das, A., Hof, H., Niemel, C., Donselaar, T., Drulyte, I., van Kuppeveld, F. J. M., Dulin, D., Snijder, J., Herod, M. R., Hurdiss, D. L.. 2025-06-17. Integrative Structure of Norovirus NS3 Suggests a Role in RNA Transport. https://doi.org/10.1101/2025.06.17.659504

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