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bioRxiv · 10.1101/2025.05.30.656947

BioLogical: a universal analysis framework for biosystem logical dynamic

Yao, Y.·Liu, D.·Zhang, Z.·Zhao, C.·Pei, D.
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Abstract

Complex biosystems exhibit ordered, functional, self-organized features. How-ever, a universal framework for exploring their logical paradigms and dynamic characteristics remains lacking. Here we describe BioLogical, a user-friendly R package, designed for analyzing properties of biosystems. We demonstrate its versatile capacities of deciphering multi-valued logical paradigms, calculating order parameters, and simulating system dynamic, even multi-valued Quine-McCluskey and logical satisfiability analysis. The open-source software is available at https://github.com/YuxiangYao/BioLogical.

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Yao, Y., Liu, D., Zhang, Z., Zhao, C., Pei, D.. 2025-06-02. BioLogical: a universal analysis framework for biosystem logical dynamic. https://doi.org/10.1101/2025.05.30.656947

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