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bioRxiv · 10.1101/2025.05.29.656749

Increased Complement C4 in a Sparse Neuronal Subset Induces Network-Wide Transcriptomic Alterations in the Prefrontal Cortex

Bolshakova, S.·Carmen Sifuentes, S. E.·Phadke, R. A.·Brack, A.·Caley, P.·Dias, C.·Cruz Martin, A.
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Abstract

The complement component C4 regulates synaptic refinement and plasticity in the brain and has been implicated in multiple neurological and psychiatric disorders, with especially strong genetic evidence linking elevated C4A expression to schizophrenia. However, it remains unclear whether localized C4 elevation in a small neuronal population is sufficient to reshape broader cortical gene-regulatory programs and cellular phenotypes. To address this question, we overexpressed mouse C4 in approximately 2% of prefrontal cortical neurons using in utero electroporation and performed bulk RNA sequencing on microdissected prefrontal cortex. Despite the sparse manipulation, C4 OE was associated with broad transcriptional remodeling across tissue composed predominantly of untransfected cells, including coordinated changes in cholesterol biosynthesis, axon and synaptic associated programs, vascular/ECM pathways, and immune and stress related responses. Comparison with a schizophrenia synaptic proteomic dataset identified limited global correspondence but selective gene and pathway level overlap in specific molecular programs. Reference based projection of directional DEG signatures onto a cortical single cell transcriptomic reference further identified cell type-associated structure, including prominent astrocyte and vascular associated axes and distinct lipid/metabolic, vascular/endothelial interferon associated, and immune/stress correlation domains. Spatial validation with MFISH showed increased Hmgcr expression in neighboring GFP-negative cells, while PLIN2 imaging revealed increased DAPI-associated/perinuclear lipid-droplet burden within the local C4 OE field. Together, these findings support a model in which sparse neuronal C4 elevation is associated with broader remodeling of the local cortical environment, including a non-cell-autonomous component involving neighboring cell lipid associated responses. These results expand the interpretation of C4 risk biology beyond synapse elimination alone and suggest that focal immune-gene dysregulation can engage lipid-homeostatic, stress-related, and cell-type-associated transcriptional programs relevant to cortical circuit vulnerability.

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Bolshakova, S., Carmen Sifuentes, S. E., Phadke, R. A., Brack, A., Caley, P., Dias, C., Cruz Martin, A.. 2025-05-29. Increased Complement C4 in a Sparse Neuronal Subset Induces Network-Wide Transcriptomic Alterations in the Prefrontal Cortex. https://doi.org/10.1101/2025.05.29.656749

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