Search bioRxiv⌕ Search

bioRxiv · 10.1101/2025.05.15.654261

First report of Photobacterium damselae subspecies damselae in Razorbill (Alca torda)

Abstract

A razorbill (Alca torda) was found dead in Bacoli, Italy, on January 16, 2023, during an exceptional irruptive event. The bird, a young female weighing 800 g with a moderate nutritional status and no external traumatic injuries underwent a post-mortem examination, which revealed coelomitis with severe congestion of the liver, lungs, kidneys, and myocardium. Lung, liver, kidney, and heart samples were collected for microbiological and histopathological analyses. Bacterial isolation on blood agar showed the growth of spherical/ovoid colonies after 48 hours, consistent with the Photobacterium genus. Identification by MALDI-TOF MS and PCR confirmed the presence of Photobacterium damselae subsp. damselae (Pdd), supported by 16S gene sequencing and detection of the ureC gene. PCR screening for virulence factors identified the hlyAch gene in lung samples, suggesting a potentially pathogenic strain in avian species. Histopathological examination showed severe, inflammatory infiltrates and widespread hemorrhages in the liver, the lung tissue and kidneys. In the myocardium, mild and multifocal lymphocytic infiltrates were present. These findings suggest a significant role of P. damselae subsp. damselae in the observed lesions. The results of the study revealed a new cross-species transmission of this potential zoonotic bacterium and the need for further research in this field. ImportanceWith this study we revealed the first isolation of Photobacterium damselae subsp. damselae in a razorbill but especially the first in a migratory bird. We documented a new cross-species transmission of P. damselae subsp. damselae and the need for further research, highlighting its zoonotic potential and therefore raising concerns about potential implications for marine wildlife, aquaculture and human health. Considering the role of migratory birds in the spread of infectious diseases even over long distances and the effect of climate change on marine ecosystems, and consequently on the circulation of pathogens, it is essential to adopt a preventive approach to mitigate this potential zoonotic risks.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Minichino, A., Lucibelli, F., Guardia, T., Balestrieri, R., Aceto, S., Vaccaro, E., Dipineto, L., Sapio, M., Santaniello, A., De Luca Bossa, L. M., D Alessio, N., Fioretti, A., Borrelli, L.. 2025-05-17. First report of Photobacterium damselae subspecies damselae in Razorbill (Alca torda). https://doi.org/10.1101/2025.05.15.654261

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

A population-scale landscape of the subgingival microbiome reveals divergent routes to periodontal dysbiosis

Periodontitis is an archetypical mucosal inflammatory disease in which microbiome dysbiosis at the tooth-epithelial interface interacts with host genetic and behavioral risk factors to drive immune-mediated tissue destruction. Although subgingival microbiome compositional shifts are thought to parallel disease severity, microbiome variation at the population-level and its relationship to periodontal clinical phenotypes and disease-modifying factors remain poorly defined. Here, we use unsupervised manifold learning to map the compositional landscape of the subgingival microbiome in 1,355 adults spanning periodontal health to severe periodontitis. We identified eight latent microbiome states organized along a branching continuum from eubiosis to dysbiosis. An intermediate microbial configuration marked ecological destabilization and bifurcation into two distinct periodontitis-associated dysbiotic trajectories, distinguished by links to gingival inflammation and smoking. Although the microbiome trajectories broadly tracked periodontal destruction, a minority of individuals showed discordant microbiome-clinical phenotypes, with some individuals with periodontitis retaining otherwise eubiotic microbiomes enriched for low-abundance pathobionts, while some cases of health or mild disease had highly dysbiotic communities, suggesting distinct host susceptibility. Together, these findings define a population-scale ecological landscape of the subgingival microbiome, reveal divergent trajectories to periodontal dysbiosis, and highlight heterogeneity in the relationship between microbial community structure and clinical disease expression.

microbiology↗

The iron-binding siderophore enterobactin is required for the response of multi-drug resistant Klebsiella pneumoniae to zinc limitation

To persist during infection Klebsiella pneumoniae must overcome nutrient iron and zinc limitation imposed by the host immune system through a process called nutritional immunity. Secreted small molecule siderophores are a major virulence determinant of Klebsiella pneumoniae pathogenesis and are presumed to overcome nutritional immunity by binding iron for bacterial acquisition. In this work, we set out to identify how a multi-drug resistant K. pneumoniae grows in zinc limited environments. Using unbiased transcriptomics, proteomics, and an arrayed transposon screen, we identified that synthesis and uptake of the siderophore enterobactin is required to allow for growth in low zinc conditions. Iron-specific chelators did not replicate this phenotype and addition of supplemental iron through heme in growth media could not complement severe growth defects of enterobactin mutant K. pneumoniae experiencing zinc limitation. Finally, zinc starvation induced enterobactin production independent of the canonical zinc uptake regulator (Zur) transcription factor suggesting an unidentified regulatory mechanism by which Gram-negative pathogens may respond to zinc stress. Together, these studies expand the role of enterobactin beyond iron regulation and highlight a previously unreported link between iron and zinc homeostasis in Klebsiella pneumoniae.

microbiology↗

A microbiota-derived protease links phage susceptibility to host epithelial responses

Bacteriophages are major ecological drivers of gut microbial ecology, yet whether bacterial mechanisms that determine phage susceptibility have consequences for the mammalian host remains poorly understood. Here, we identify dipeptidyl peptidase 11 (Dpp11a), the predominant active serine protease of the prevalent gut commensal Phocaeicola vulgatus, as an unexpected bacterial defence factor. Dpp11a protects against environmental proteases and confers resistance to bacteriophage infection. Metatranscriptomic analyses further reveal increased expression of both dpp11a and P. vulgatus-associated phage transcripts in ulcerative colitis stool samples, indicating that both components of this interaction are transcriptionally active in disease-associated human microbiomes. Using the microfluidic gut-on-a-chip co-culture model HuMiX, we show that the absence of Dpp11 is accompanied by altered epithelial tight-junction remodelling during phage-bacterial infection. Together, our findings reveal that the consequences of bacterial phage defence can extend beyond phage-bacterium interactions to the mammalian epithelium.

microbiology↗