Synergistic targeting of cancer cells through simultaneous inhibition of key metabolic enzymes

Dreute, J.; Stengel, J.; Becher, J.; van den Borre, D. R.; Pfisterer, M.; Bartkuhn, M.; Beutgen, V. M.; Ndreshkjana, B.; Gaertner, U.; Graumann, J.; Huck, M.; Klatt, S.; Leff, C. L.; Farin, H. F.; Nist, A.; Schmitz, R.; Stiewe, T.; Teply-Szymanski, J.; Wilhelm, J.; Cabrera-Orefice, A.; Schmitz, M. L.

doi:10.1101/2025.05.02.651820

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bioRxiv · 10.1101/2025.05.02.651820

Synergistic targeting of cancer cells through simultaneous inhibition of key metabolic enzymes

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Abstract

As cancer cell specific rewiring of metabolic networks creates potential therapeutic opportunities, we conducted a synthetic lethal screen utilizing inhibitors of metabolic pathways. Simultaneous administration of (R)-GNE-140 and BMS-986205 (Linrodostat) preferentially halted proliferation of ovarian cancer cells, but not of their non-oncogenically transformed progenitor cells. While (R)-GNE-140 inhibits lactate dehydrogenase (LDH)A/B and thus effective glycolysis, BMS-986205, in addition to its known inhibitory activity on Indoleamine 2,3-dioxygenase (IDO1), also restricts oxidative phosphorylation (OXPHOS), as revealed here. BMS-986205, which is being tested in multiple Phase III clinical trials, inhibits the ubiquinone reduction site of respiratory complex I and thus compromises mitochondrial ATP production. The energetic catastrophe caused by simultaneous interference with glycolysis and OXPHOS resulted in either cell death or the induction of senescence in tumor cells, with the latter being eliminated by senolytics. The frequent synergy observed with combined inhibitor treatment was comprehensively confirmed through testing on tumor cell lines from the DepMap panel and on human colorectal cancer organoids. These experiments revealed highly synergistic activity of the compounds in a third of the tested tumor cell lines, correlating with alterations in genes with known roles in metabolic regulation and demonstrating the therapeutic potential of metabolic intervention.

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Dreute, J., Stengel, J., Becher, J., van den Borre, D. R., Pfisterer, M., Bartkuhn, M., Beutgen, V. M., Ndreshkjana, B., Gaertner, U., Graumann, J., Huck, M., Klatt, S., Leff, C. L., Farin, H. F., Nist, A., Schmitz, R., Stiewe, T., Teply-Szymanski, J., Wilhelm, J., Cabrera-Orefice, A., Schmitz, M. L.. 2025-05-08. Synergistic targeting of cancer cells through simultaneous inhibition of key metabolic enzymes. https://doi.org/10.1101/2025.05.02.651820

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