Cross-species analysis of experimental PH at single cell resolution reveals prominent contributions Ednrb+ EC and Dhcr24+ macrophage populations

Li, B.; Xing, Y.; Zhou, Y.; Xiao, X.; Shu, T.; Song, X.; Zhao, H.; Wang, X.-J.; Pang, J.; Yang, P.; Wang, J.; Yu, P. B.; Wang, C.

doi:10.1101/2025.04.30.651587

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bioRxiv · 10.1101/2025.04.30.651587

Cross-species analysis of experimental PH at single cell resolution reveals prominent contributions Ednrb+ EC and Dhcr24+ macrophage populations

Li, B.·Xing, Y.·Zhou, Y.·Xiao, X.·Shu, T.·Song, X.·Zhao, H.·Wang, X.-J.·Pang, J.·Yang, P.·Wang, J.·Yu, P. B.·Wang, C.

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Abstract

BackgroundAnimal models are used widely to study pulmonary hypertension (PH). The cell populations that respond to disease-inducing stimuli in these models and their relationship to human disease remain incompletely defined. Materials and methodThis study analyzed the relationship between several rodent models of PH and human disease at single-cell resolution. scRNA-seq was performed on lungs from mice exposed to hypoxia or Sugen/hypoxia, rats exposed to monocrotaline, and controls. A cross-species single-cell dataset was integrated with human lung cell atlas (HLCA) and single-cell dataset from idiopathic pulmonary arterial hypertension (IPAH) to identify overlapping cell subsets between experimental and human disease and species. ResultsHigh levels of overlap were found between species and models of PH, HLCA, and IPAH datasets. Cell subsets perturbed in rat and mouse PH were similar to those found in human disease, with macrophages and endothelial cells being most affected. A novel Dhcr24high macrophage subset harboring both tissue-remodeling and pro- inflammatory features was consistently increased across models. Several functionally diverse endothelial subtypes were found, including novel Ednrb+ and Nox2+ subpopulations, reflecting enhanced apoptosis, dysregulated angiogenesis and proliferation, and reactive oxygen species-mediated stress. These macrophage and endothelial subtypes expressed numerous PH drug target genes, and exhibited potential disease-specific intercellular interactions involving Angptl4, Cxcl12, and Sema3 signaling. Disease-associated changes in these populations were confirmed by immunofluorescence in lung tissues from animals and patients. ConclusionsWe established a comprehensive cross-species single-cell atlas of mainstream rodent PH models, highlighting several novel macrophage and endothelial subtypes and signaling motifs potentially contributing to human disease.

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Li, B., Xing, Y., Zhou, Y., Xiao, X., Shu, T., Song, X., Zhao, H., Wang, X.-J., Pang, J., Yang, P., Wang, J., Yu, P. B., Wang, C.. 2025-05-07. Cross-species analysis of experimental PH at single cell resolution reveals prominent contributions Ednrb+ EC and Dhcr24+ macrophage populations. https://doi.org/10.1101/2025.04.30.651587

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