Search bioRxiv⌕ Search

bioRxiv · 10.1101/2025.04.29.651165

Phosphorus fertility regulates microbial carbon use efficiency and SOM decomposition in non-allophanic Andosols

Abstract

Phosphorus (P) availability affects soil carbon (C) cycling such as microbial C use efficiency (CUE) and priming effects (PEs). While non-allophanic Andosols are characterized by high organic C content and strong P retention, the effects of different P fertilization regime on C dynamics in these soils remain poorly understood. In this study, we conducted a 20-day incubation experiment using 13C-enriched glucose to investigate how different soil P levels (Truog-P: 157 mg P kg-1 and 12 mg P kg-1) impacted microbial C dynamics in non-allophanic Andosols from contrasting field management practices. Our results showed that soil organic matter (SOM) priming is associated with P fertilization management, with total primed CO2-C emissions remaining low in these soils. In the high-P soils, glucose and nitrogen (N) addition resulted in negative PEs, whereas in the low-P soils, the same treatment stimulated microbial SOM mining, resulting in positive PEs. Additionally, higher glucose-derived CUE was found in the high-P soils than in low-P soils after 20 days of incubation. These findings suggest that long-term P fertilization influences both substrate-induced microbial assimilation and SOM decomposition, with P limitation potentially promoting SOM mining which, along with concurrent soil acidity and exchangeable Al toxicity, modulates CUE. This study provides insights for improving C sequestration in non-allophanic Andosols through soil fertility management.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

KOIZUMI, W., CLOUGH, T. J., KOJIMA, S., MAKINO, T., SUGIHARA, S., TAJIMA, R., UCHIDA, Y., HAMAMOTO, T.. 2025-04-29. Phosphorus fertility regulates microbial carbon use efficiency and SOM decomposition in non-allophanic Andosols. https://doi.org/10.1101/2025.04.29.651165

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

aaRSID, an engineered pyrrolysyl-tRNA synthetase platform for multi-probe proximity proteomics

Proximity labeling (PL) methods utilize spatially targeted chemical or enzymatic generation of a diffusible, reactive intermediate to covalently tag neighboring proteins in living systems. Unlike other tools for studying molecular interactions, PL can detect transient protein relationships with high spatial and temporal sensitivity, allowing for insight into their roles in biological processes. However, current enzymatic PL tools, such as TurboID and APEX2, are limited by their substrate structure and chemistry, which can generate significant background and/or perturb cellular physiology. To address these limitations, we have developed aminoacyl-tRNA synthetase ID (aaRSID), a PL tool that leverages an engineered pyrrolysyl tRNA synthetase (PylRS) for proximity labeling of proteins. We chose PylRS because it can catalyze promiscuous lysine labeling in the absence of its cognate tRNA and utilize a variety of non-canonical amino acids (ncAAs) as substrates. Here, we demonstrate aaRSID's intrinsic proximity labeling activity, use directed evolution to improve this activity, and apply the improved mutant (aaRSID-Ma1.3) for subcellular proteomics and multiplexed imaging. Our work establishes aminoacyl-tRNA synthetases as a new PL enzyme class and introduces a versatile chemical platform for developing ncAA-derived probes to map cellular microenvironments, greatly expanding the applications possible of PL technology.

biochemistry↗

Cellular uptake of folate-olaparib conjugates via folate receptor-mediated endocytosis: Potential for selective delivery of DNA damage response inhibitors into tumour cells

The folate receptor (FR) is overexpressed in a range of human tumours including ovarian cancer cells. We propose that the overexpression of the FR on the surface of ovarian tumour cells could be exploited for the selective delivery of a DNA damage response inhibitor (DDRi) in the form of an intact folate drug conjugate (FDC). This approach would improve the therapeutic index of the parent DDRi facilitating combination studies of the DDRi-based FDC with DNA damaging chemotherapy. FR-mediated cellular uptake of the proposed folate drug conjugates is requisite for FDC selective delivery into tumours. In this study, we synthesised a series of olaparib-based folate conjugates that maintained the biochemical PARP1 inhibition associated with olaparib and showed binding affinity for the folate receptor. Significantly, we identified compounds 10b and 11 that selectively enter FR overexpressing tumour cells via folate receptor-mediated endocytosis in their intact form and engage with their target as demonstrated by the potent inhibition of PARylation (KB cells, PARylation IC50 = 5.7 and 3.9 nM; respectively).

biochemistry↗

Architecture and Energy Transfer of the Bacterial Photosynthetic Unit

In phototrophic organisms, pigment-protein membrane complexes are densely packed to form photosynthetic units (PSUs) that capture solar energy and convert it into chemical energy. Although the structures of many individual photosynthetic complexes have been resolved, how they are arranged and interact with others within photosynthetic membranes to enable efficient excitation energy transfer (EET) remains poorly understood. Here, we report cryo-electron microscopy structures of PSU supercomplex assemblies from the phototrophic a-proteobacterium Rhodovulum viride, including an RC-LH1 core associated with one or two peripheral LH2 complexes and a curved LH2 tetramer. These membrane-derived assemblies define the relative positions and orientations of neighboring photosynthetic complexes and place their pigment arrays in proximity across antenna-antenna and antenna-core interfaces. Structure-based simulations identify potential EET pathways within the PSU assemblies and reveal rapid energy transfer across both LH2-LH2 and LH2-LH1 interfaces. Collectively, these findings provide insights into the assembly and structural modularity of bacterial PSUs and elucidate how the lateral organization of membrane protein complexes facilitates efficient energy transfer. This work extends structural studies of bacterial photosynthesis from individual complexes to their native higher-order assembly, providing a framework for understanding how photosynthetic supercomplex organization shapes energy migration and for guiding the design of artificial photosynthesis.

biochemistry↗