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bioRxiv · 10.1101/2025.04.07.647376

SpeedyTrack: Direct microsecond wide-field single-molecule tracking and super-resolution mapping via CCD vertical shift

Steves, M. A.·Xu, K.
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Abstract

We introduce spatially-encoded dynamics tracking (SpeedyTrack), a strategy to enable direct microsecond wide-field single-molecule tracking/imaging on common microscopy setups. Capitalizing on the native sub-microsecond vertical charge shifting capability of popular electron-multiplying charge-coupled devices (EM-CCDs), SpeedyTrack staggers wide-field single-molecule images along the CCD chip at [~]10-row spacings between consecutive timepoints, effectively projecting the time domain to the spatial domain. Wide-field tracking is thus achieved for freely diffusing molecules at down to 50 {micro}s temporal resolutions for >30 timepoints, permitting trajectory analysis to quantify diffusion coefficients up to 1,000 {micro}m2/s. Concurrent acquisition of single-molecule diffusion trajectories and Forster resonance energy transfer (FRET) time traces further elucidates conformational dynamics and binding states for diffusing molecules. Moreover, with a temporally patterned vertical shifting scheme, we deconvolve the spatial and temporal information to map long, fast single-molecule trajectories at the super-resolution level, thus resolving the diffusion mode of a fluorescent protein in live cells with nanoscale resolution. While these demonstrated capabilities substantially outperform existing approaches, SpeedyTrack further stands out for its simplicity by directly working off the built-in functionalities of EM-CCDs without the need to modify existing optics or electronics. We thus provide a facile solution to the microsecond tracking/imaging of single molecules and their super-resolution mapping in the wide field.

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Steves, M. A., Xu, K.. 2025-04-10. SpeedyTrack: Direct microsecond wide-field single-molecule tracking and super-resolution mapping via CCD vertical shift. https://doi.org/10.1101/2025.04.07.647376

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