Search bioRxiv⌕ Search

bioRxiv · 10.1101/2025.03.27.645446

Archaeological Bone Assemblages Trace Changes in Turtle and Tortoise Diversity in Continental Southeast Asia

Abstract

Among tropical regions, continental Southeast Asia is a major hotspot of biodiversity. However, due to rapid urban expansion and severe deforestation, this area is recognized as one of the top global conservation priorities. As in other tropical regions, the prevailing idea is that the decline of local biodiversity in this region is a direct result of the overwhelming environmental changes that have occurred over the last 80 years. However, paleoecological data indicate that tropical forests have been exploited by human populations since at least the Late Pleistocene, and forest clearance for farming began several thousand years ago. To gain a complete overview of the long-term evolution of vertebrate fauna in continental Southeast Asia, it is necessary to investigate the past. This task is currently out of reach, mainly due to the lack of paleontological and historical studies regarding small animals, including emblematic taxa like turtles. Indeed, although some evidence suggests that the biodiversity of turtles in continental Southeast Asia may have changed over the last millennia, the paucity of historical records and archaeological assemblages studies currently precludes further assessment of the potential effect of past environmental changes, including potential human disturbances. The present study consists of a paleontological analysis of turtle bone assemblages collected from four prehistoric sites in Thailand and Cambodia. The aim is to test the hypothesis of changes in turtle biodiversity over the last 10,000 years. Our results indicate that turtle assemblages in most areas have experienced only limited changes across the Holocene, except for Laang Spean in Cambodia. However, a few rare taxa may represent extirpated or extinct species of Testudinidae in continental Southeast Asia at an unknown time during the Holocene. We also observed significant changes in the geographic distribution of some genera, such as Batagur, Cyclemys, and Amyda. The fact that turtle fauna has been rather resilient and unchanged for several millennia shows that past human impact in most investigated areas had limited effects on these taxa. The strong modifications observed in Cambodia could, however, serve as a warning about the potential fate of turtle biodiversity in this region if further loss of natural environments occurs.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Bochaton, C., Wilailuck, N., Chantasri, S., Maneechote, M., Mithong, S., Sophady, H., Auetrakulvit, P., Forestier, H., Zeitoun, V., Bowonsachoti, J., Claude, J.. 2025-03-28. Archaeological Bone Assemblages Trace Changes in Turtle and Tortoise Diversity in Continental Southeast Asia. https://doi.org/10.1101/2025.03.27.645446

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Constraining Palaeogeography and Palaeotides for the Cambrian using cnidarian medusae

The ocean tides influence key Earth system processes at a range of spatial and temporal scales. It is known that the geometry of ocean basins is the leading controller of tidal energetics, so well-constrained palaeogeographic reconstructions and tidal properties for Earths past are imperative when investigating other Earth system processes. Here, we present a novel way to constrain both deep-time tidal model results and reconstructions, by combining palaeoecology with sedimentology. We compare new palaeo-tidal model simulations for the Cambrian period, significant for the early origin and radiation of major animal fauna, to tidal proxies. One of the most abundant soft-bodied organisms preserved during this time are cnidarian medusae (jellyfish). A total of 17 cnidarian medusae localities were obtained through the literature, which had an adequate global distribution and occurred at regular intervals throughout the period of study. In some locations there were also estimates of palaeo-tidal range. Our results show a good agreement between the simulations and proxy data. In the few locations where there is disagreement, it is proposed that the palaeogeographic reconstructions are missing details, e.g., island chains, and our results allow for the palaeogeographic reconstructions to be improved. The proxy method presented is promising and can be applied to other time-periods with different marine fossils, particularly at evolutionary and extinction periods where the marginal marine environment is of importance.

paleontology↗

Phylogenetic inference from an incomplete fossil record

Fossil data is crucial to construct phylogenetic time trees, which serve as the basis to test a wide range of evolutionary hypotheses. While the fossil record is known to be incomplete, modern stratigraphy provides predictions of the structure of the fossil record as expressed by gap location and duration. Advances in phylogenetic model development allow us to propagate this information into Bayesian phylogenetic inference in the form of priors on time-variable fossil sampling. However, the impact and role of stratigraphic architectures on time tree inference has so far remained unexplored. We introduce a novel simulation framework that combines realistic stratigraphic forward models with phylogenetic simulations. Using this framework, we examine (1) how stratigraphically plausible model violations of fossil sampling due to gaps affect total-evidence inference under the fossilized birth-death model and (2) if stratigraphic knowledge on gap duration and timing improves inference when incorporated in priors on fossil sampling. We find that total-evidence analysis is robust to stratigraphically plausible distribution of gaps in disparate stratigraphic architectures, with results being instead dominated by the number of morphological characters. Surprisingly, incorporating information on prominent gaps in the stratigraphic record does not improve phylogenetic inference. Our results suggest that phylogenetic inference is robust to model violations introduced by stratigraphic gaps over short timescales, with results being dominated by a priori known data availability constraints such as morphological character matrix size. This research establishes the foundations for joint modeling of phylogenetic and stratigraphic processes and narrows the knowledge gap between paleontology, stratigraphy, and neontology.

paleontology↗

Temporal resolution reshapes dynamics of inferred community structure and extinction selectivity across the Permian-Triassic mass extinction

The Permian-Triassic mass extinction fundamentally restructured ecosystems, yet it remains unresolved whether ecological collapse unfolded gradually or in discrete steps, and how extinction selectivity varied with environmental change. Here, we analyse marine food webs from Meishan (China) at high temporal resolution. We show that trophic structure destabilised prior to peak biodiversity loss, followed by a structural tipping point during the extinction interval when the community became less robust to secondary extinctions. Extinction selectivity shifted substantially across the study interval. During the extinction interval, extinction was concentrated at lower trophic levels, propagating upwards from benthic herbivores to higher-level consumers. Although coarse resolution preserves temporal trends in trophic structure and extinction selectivity, it obscures abrupt transitions, sequential extinction dynamics, and critical shifts in ecological organisation. We demonstrate that temporal resolution governs inference of extinction dynamics, with important implications for reconstructing past ecological crises and interpreting ecosystem responses to rapid environmental change.

paleontology↗