Inflammatory bowel disease risk gene C1ORF106 regulates actin dynamics in intestinal epithelial cells

Hebert-Milette, I.; Levesque, C.; Paquette, J.; Rivard, M.-E.; Villeneuve, L.; Boucher, G.; Goyette, P.; Charron, G.; Rioux, J. D.

doi:10.1101/2025.03.14.643205

bioRxiv · 10.1101/2025.03.14.643205

Inflammatory bowel disease risk gene C1ORF106 regulates actin dynamics in intestinal epithelial cells

Hebert-Milette, I.·Levesque, C.·Paquette, J.·Rivard, M.-E.·Villeneuve, L.·Boucher, G.·Goyette, P.·Charron, G.·Rioux, J. D.

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Abstract

Background and aimsC1ORF106 has previously been associated with inflammatory bowel diseases (IBD) via large-scale genetic studies. Increased intestinal permeability is a hallmark of IBD and is observed in at-risk individuals prior to the appearance of clinical symptoms. C1ORF106 was previously shown to regulate intestinal barrier permeability through the regulation of adherens junction stability and through the formation of tight junctions, which impacted actin assembly. However, the downstream impact and molecular mechanisms involved in actin regulation by C1ORF106 havent been explored. Our study aimed at identifying which pathways involved in intestinal epithelial barrier regulation and F-actin regulation are impacted by C1ORF106 and its IBD-associated variant. MethodsWe knocked down (KD) the expression of C1ORF106 in human colonic epithelial cells and characterized the function of the 333F variant in intestinal epithelial spheroid cultures obtained from patient-derived human induced pluripotent stem cell (hiPSC). We measured barrier permeability and characterized spheroid formation, actin regulation and cell migration though immunofluorescence, western blots and permeability assays. ResultsC1ORF106 KD leads to impaired cortical actin belt dynamics and regulation of stress fiber formation, resulting in increased cell constriction, impaired barrier permeability, cell polarity and cell migration. Moreover, we demonstrated that an inhibition of ROCK rescues the actin belt and cell polarity phenotypes in C1ORF106 KD cells, demonstrating that C1ORF106 regulates these phenotypes through a ROCK-dependent mechanism. We also observed an altered nmMYO2-P localization in C1ORF106 KD cells associated with the formation of Vacuolar Apical Compartments (VACs), which are important for 3D epithelial spheroid formation. We observed a similar impact on cell polarity in intestinal epithelial spheroids obtained from hiPSC carrying the 333F variant, providing additional support that this pathway is involved in disease development. ConclusionWe provide insights into the molecular mechanisms by which C1ORF106 controls actin dynamics to regulate intestinal epithelial integrity. summaryC1ORF106 and its inflammatory bowel disease-associated genetic variant regulate intestinal barrier permeability through the regulation of tight junction formation and cell polarity in epithelial cells. This regulation is associated with altered F-actin dynamics that are ROCK-dependent.

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Hebert-Milette, I., Levesque, C., Paquette, J., Rivard, M.-E., Villeneuve, L., Boucher, G., Goyette, P., Charron, G., Rioux, J. D.. 2025-03-15. Inflammatory bowel disease risk gene C1ORF106 regulates actin dynamics in intestinal epithelial cells. https://doi.org/10.1101/2025.03.14.643205

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