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bioRxiv · 10.1101/2025.02.24.640007

Geospatially informed representation of spatial genomics data with SpatialFeatureExperiment

Moses, L.·Huseynov, A.·Rich, J.·Pachter, L.
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Abstract

SpatialFeatureExperiment is a Bioconductor package that leverages the versatility of Simple Features for spatial data analysis and SpatialExperiment for single-cell -omics to provide an expansive and convenient S4 class for working with spatial -omics data. SpatialFeatureExperiment can be used to store and analyze a variety of spatial -omics data types, including data from the Visium, Xenium, MERFISH, SeqFish, and Slide-seq platforms, bringing spatial operations to the SingleCellExperiment ecosystem.

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Moses, L., Huseynov, A., Rich, J., Pachter, L.. 2025-02-27. Geospatially informed representation of spatial genomics data with SpatialFeatureExperiment. https://doi.org/10.1101/2025.02.24.640007

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