Heterogeneous T cell response patterns within established clinical phases of Hepatitis B infection revealed through the rapid functional characterization of HBV-specific T cells in whole blood

Le Bert, N.; Koffas, A.; Kumar, R.; Facchetti, F.; Tan, A. T.; Gill, U. S.; Mak, L.-Y.; Stretch, S. W.; Miao, T.; Hariharaputran, S.; Hang, S. K.; Guo, Y.; Chen, Q.; Degasperi, E.; Lampertico, P.; Chow, W. C.; Bertoletti, A.; Kennedy, P. T.

doi:10.1101/2025.02.11.637593

bioRxiv · 10.1101/2025.02.11.637593

Heterogeneous T cell response patterns within established clinical phases of Hepatitis B infection revealed through the rapid functional characterization of HBV-specific T cells in whole blood

Le Bert, N.·Koffas, A.·Kumar, R.·Facchetti, F.·Tan, A. T.·Gill, U. S.·Mak, L.-Y.·Stretch, S. W.·Miao, T.·Hariharaputran, S.·Hang, S. K.·Guo, Y.·Chen, Q.·Degasperi, E.·Lampertico, P.·Chow, W. C.·Bertoletti, A.·Kennedy, P. T.

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Abstract

Background & AimsThere is an unmet need for immunological biomarkers in chronic hepatitis B (CHB), where patient management relies on virological and biochemical markers despite the crucial role of virus-specific T cells in controlling viral replication and disease progression. To address this, we developed the HBV-cytokine release assay (HBV-CRA), a rapid, point-of-care test that measures multiple cytokines in whole blood after HBV-peptide stimulation. MethodsWe first assessed the assays sensitivity by spiking whole blood with engineered HBV-specific T cells. Next, we compared sensitivity and consistency of HBV-CRA to ex vivo IFN-{gamma} ELISpot assays. We then applied the assay in a cross-sectional study of 235 CHB patients and longitudinally in acute HBV patients during HBsAg sero-clearance. ResultsThe HBV-CRA detected T cell function in 80% of CHB cases and showed that elevated IL-2 and IFN-{gamma} levels after Core peptide stimulation were associated with HBsAg clearance. Importantly, unsupervised clustering identified distinct immune response patterns independent of established clinical and virological classifications. The assay also demonstrated the functional impact of NUC treatment on HBV-specific T cell responses. ConclusionsThe HBV-CRA is a rapid and easy-to-use assay that identifies immune profiles associated with HBsAg clearance and differentiates CHB patients based on antiviral T cell function. Its application in a large CHB cohort revealed that traditional disease phase classifications, based on viral and clinical parameters, cannot predict HBV-specific T cell profiles. The HBV-CRA has the potential to guide patient stratification for immunotherapeutic interventions.

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Le Bert, N., Koffas, A., Kumar, R., Facchetti, F., Tan, A. T., Gill, U. S., Mak, L.-Y., Stretch, S. W., Miao, T., Hariharaputran, S., Hang, S. K., Guo, Y., Chen, Q., Degasperi, E., Lampertico, P., Chow, W. C., Bertoletti, A., Kennedy, P. T.. 2025-02-15. Heterogeneous T cell response patterns within established clinical phases of Hepatitis B infection revealed through the rapid functional characterization of HBV-specific T cells in whole blood. https://doi.org/10.1101/2025.02.11.637593

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