Computationally-designed aptamers targeting RAD51-BRCA2 interaction inhibit RAD51 nuclear recruitment

Miliordini, G.; Zacco, E.; Armaos, A.; Di Palma, F.; Masi, M.; Giloid, M.; Rupert, J.; Broglia, L.; Varignani, G.; Oneto, M.; Scotto, M.; Marotta, R.; GIROTTO, S.; Cavalli, A.; Tartaglia, G. G.

doi:10.1101/2025.01.20.633558

bioRxiv · 10.1101/2025.01.20.633558

Computationally-designed aptamers targeting RAD51-BRCA2 interaction inhibit RAD51 nuclear recruitment

Miliordini, G.·Zacco, E.·Armaos, A.·Di Palma, F.·Masi, M.·Giloid, M.·Rupert, J.·Broglia, L.·Varignani, G.·Oneto, M.·Scotto, M.·Marotta, R.·GIROTTO, S.·Cavalli, A.·Tartaglia, G. G.

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Abstract

The interaction between RAD51 and BRCA2 plays a key role in homologous recombination (HR), a critical DNA repair mechanism essential for the survival of cancer cells. Disrupting this interaction increases the sensitivity of cancer cells to chemotherapeutic agents. Here, we employed in silico methods to design a novel class of aptamers--customized single-stranded oligonucleotides--specifically engineered to bind RAD51. These aptamers were developed with the aim of selectively modulating RAD51s nuclear recruitment and its role in DNA repair processes. The leading candidate displays high affinity for RAD51, competing with BRCA2 for the same interaction site in vitro, as confirmed through biolayer interferometry (BLI) and fluorescence lifetime imaging microscopy (FLIM). We tested the efficacy of the leading aptamer in pancreatic cancer cells and observed that it significantly impedes RAD51 nuclear localization, reduces homologous recombination (HR) efficiency, and increases DNA damage. Critically, our aptamer potentiates the cytotoxicity of the PARP inhibitor olaparib, exploiting synthetic lethality (SL) to induce cancer cell death. Our study showcases an aptamer-based approach for selectively targeting protein interactions within DNA repair pathways, introducing a promising avenue for SL-based treatments applicable to a wide range of cancers.

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Miliordini, G., Zacco, E., Armaos, A., Di Palma, F., Masi, M., Giloid, M., Rupert, J., Broglia, L., Varignani, G., Oneto, M., Scotto, M., Marotta, R., GIROTTO, S., Cavalli, A., Tartaglia, G. G.. 2025-01-21. Computationally-designed aptamers targeting RAD51-BRCA2 interaction inhibit RAD51 nuclear recruitment. https://doi.org/10.1101/2025.01.20.633558

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