Self-Organizing Assembloids Reveal Enteric Nervous System Dynamics in Gut Homeostasis and Regeneration

Sari, I.; Uzun, B.; Oguz, M. O.; Gursoy, E.; Satlykov, N.; Gemalmayan, D. A.; Gonullu, N.; Valenta, T.; Aerts Kaya, F.; Gizer, M.; Korkusuz, P.; Degirmenci, B.

doi:10.1101/2025.01.14.632538

bioRxiv · 10.1101/2025.01.14.632538

Self-Organizing Assembloids Reveal Enteric Nervous System Dynamics in Gut Homeostasis and Regeneration

Sari, I.·Uzun, B.·Oguz, M. O.·Gursoy, E.·Satlykov, N.·Gemalmayan, D. A.·Gonullu, N.·Valenta, T.·Aerts Kaya, F.·Gizer, M.·Korkusuz, P.·Degirmenci, B.

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Abstract

The enteric nervous system (ENS) is essential for intestinal health, exhibiting adaptability to environmental and physiological challenges. However, the mechanisms underlying ENS plasticity and resilience remain poorly understood. Organoid technology has revolutionized in vitro modeling by accurately replicating epithelial structures and enabling significant advancements in understanding gastrointestinal biology. However, traditional organoids are limited in their ability to study the ENS, as they lack the multicellular composition and functional architecture necessary to model complex interactions between neurons, glia, mesenchymal, smooth muscle, and epithelial cells. To address these limitations, we developed murine ENS-Rich Assembloids (ERAs) that self-organize to replicate the cellular diversity, including the epithelial structure, and functional architecture of native colonic tissue. These assembloids recreate neuron-glia interactions, reflect regenerative processes, and provide a novel platform for studying ENS dynamics under controlled conditions. Integrating findings from assembloids and an in vivo murine model, we demonstrate that inflammation induces coordinated reorganization of S100b+ glial cells, TUJ1+ neurons, PDGFRA+ mesenchymal cells, and epithelial cells, revealing conserved mechanisms of ENS plasticity. We identify pleiotrophin (PTN) signaling via Protein Tyrosine Phosphatase Receptor Type Z1 (PTPRZ1) as a key pathway facilitating neural elongation and enhancing neuron-glia interactions. Moreover, we show that activated neurons transfer lipids to glial cells, revealing a novel support mechanism during inflammation. These findings position enteric glia as protective hubs for neurons, fostering ENS adaptability and tissue regeneration. By building on the foundational success of organoid technology and addressing its limitations for studying the ENS, ENS-rich assembloids establish a transformative tool for investigating ENS responses in health, disease, and tissue repair.

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Sari, I., Uzun, B., Oguz, M. O., Gursoy, E., Satlykov, N., Gemalmayan, D. A., Gonullu, N., Valenta, T., Aerts Kaya, F., Gizer, M., Korkusuz, P., Degirmenci, B.. 2025-01-14. Self-Organizing Assembloids Reveal Enteric Nervous System Dynamics in Gut Homeostasis and Regeneration. https://doi.org/10.1101/2025.01.14.632538

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