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bioRxiv · 10.1101/2025.01.10.632434

Phenotypic analysis of various Clostridioides difficile ribotypes reveals consistency among core processes

Beebe, M. A.·Paredes-Sabja, D.·Kociolek, L. K.·Rodriguez, C.·Sorg, J. A.
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Abstract

Clostridioides difficile infections (CDI) cause almost 300,000 hospitalizations per year of which [~]15-30% are the result of recurring infections. The prevalence and persistence of CDI in hospital settings has resulted in an extensive collection of C. difficile clinical isolates and their classification, typically by ribotype. While much of the current literature focuses on one or two prominent ribotypes (e.g., RT027), recent years have seen several other ribotypes dominate the clinical landscape (e.g., RT106 and RT078). Some ribotypes are associated with severe disease and / or increased recurrence rates, but why are certain ribotypes more prominent or harmful than others remains unknown. Because C. difficile has a large, open pan-genome, this observed relationship between ribotype and clinical outcome could be a result of the genetic diversity of C. difficile. Thus, we hypothesize that core biological processes of C. difficile are conserved across ribotypes / clades. We tested this hypothesis by observing the growth kinetics, sporulation, germination, bile acid sensitivity, bile salt hydrolase activity, and surface motility of fifteen strains belonging to various ribotypes spanning each known C. difficile clade. In viewing these phenotypes across each strain, we see that core phenotypes (growth, germination, sporulation, and resistance to bile salt toxicity) are remarkably consistent across clades / ribotypes. This suggests that variations observed in the clinical setting may be due to unidentified factors in the accessory genome or due to unknown host-factors. ImportanceC. difficile infections impact thousands of individuals every year many of whom experience recurring infections. Clinical studies have reported an unexplained correlation between some clades / ribotypes of C. difficile and disease severity / recurrence. Here, we demonstrate that C. difficile strains across the major clades / ribotypes are consistent in their core phenotypes. This suggests that such phenotypes are not responsible for variations in disease severity / recurrence and are ideal targets for the development of therapeutics meant to treat C. difficile related infections.

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Beebe, M. A., Paredes-Sabja, D., Kociolek, L. K., Rodriguez, C., Sorg, J. A.. 2025-01-13. Phenotypic analysis of various Clostridioides difficile ribotypes reveals consistency among core processes. https://doi.org/10.1101/2025.01.10.632434

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