POLYGENIC DETERMINANTS OF H5N1 ADAPTATION TO BOVINE CELLS

Turnbull, M. L.; Zakaria, M. K.; Upfold, N. S.; Bakshi, S.; Das, U. R.; Magill, C.; Mojsiejczuk, L.; Herder, V.; Dee, K.; Liu, N.; Folwarczna, M.; Ilia, G.; Furnon, W.; Schultz, V.; Chen, H.; Devlin, R.; McCowan, J.; Young, A. L.; Po, W.-W.; Smollett, K.; Yaseen, M. A.; Filipe, A. D. S.; Iqbal, M.; Roberts, E.; Hughes, J.; Werling, D.; Murcia, P. R.; Palmarini, M.

doi:10.1101/2024.11.29.626120

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bioRxiv · 10.1101/2024.11.29.626120

POLYGENIC DETERMINANTS OF H5N1 ADAPTATION TO BOVINE CELLS

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Abstract

Avian influenza H5N1 clade 2.3.4.4b viruses caused a global panzootic and, unexpectedly, widespread outbreaks in dairy cattle, therefore representing a pandemic threat. To inform effective control strategies, it is critical to determine whether the potential to adapt to bovine cells is a generalised feature of H5N1 viruses, or is specific to clade 2.3.4.4b, or even more restricted to specific genotypes within this clade (e.g., B3.13 and D1.1). Using a large panel of H5N1 viruses representing >60 years of their natural history and other IAV for comparative purposes, we demonstrate that virus adaptation to bovine cells is: (i) highly variable across 2.3.4.4b genotypes, (ii) limited in viruses predating the global expansion of this clade, (iii) determined by the viral internal gene cassette, and (iv) not restricted to udder epithelial cells. Mutations in the PB2 polymerase subunit, particularly M631L, emerge as key determinants of adaptation, although their phenotypic effects are context dependent and have limited enhanced viral polymerase activity in human cells. Bovine B3.13 and some avian genotypes also exhibit enhanced modulation of bovine interferon-induced antiviral responses, determined by at least the viral PB2, nucleoprotein, and the non-structural protein NS1. Our results highlight the polygenic nature of IAV host range and reveal that the potential to cross the species barrier varies during the evolutionary trajectory of H5N1, with some avian viruses more predisposed to spillover than others.

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Turnbull, M. L., Zakaria, M. K., Upfold, N. S., Bakshi, S., Das, U. R., Magill, C., Mojsiejczuk, L., Herder, V., Dee, K., Liu, N., Folwarczna, M., Ilia, G., Furnon, W., Schultz, V., Chen, H., Devlin, R., McCowan, J., Young, A. L., Po, W.-W., Smollett, K., Yaseen, M. A., Filipe, A. D. S., Iqbal, M., Roberts, E., Hughes, J., Werling, D., Murcia, P. R., Palmarini, M.. 2024-12-02. POLYGENIC DETERMINANTS OF H5N1 ADAPTATION TO BOVINE CELLS. https://doi.org/10.1101/2024.11.29.626120

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