Search bioRxiv⌕ Search

bioRxiv · 10.1101/2024.11.05.621908

The Condensin II Complex Regulates the Expression of Essential Gene Expression Programs During Erythropoiesis

Abstract

Erythropoiesis is characterized by dramatic changes in gene expression in the context of a cell that is rapidly proliferating while simultaneously condensing its nucleus in anticipation of enucleation. The mechanisms that maintain high level expression of erythroid genes and promote nuclear condensation remain poorly understood. Condensin II is a ring-like complex that promotes mitotic chromatin condensation and has roles in regulating interphase chromatin architecture and gene expression. We interrogated the role of Condensin II in erythropoiesis using an erythroid-specific deletion of the Condensin II subunit, Ncaph2. Ncaph2 loss resulted in severe embryonic anemia with lethality at embryonic day 13.5. Ncaph2 mutant erythroid cells had dysregulated maturation and disrupted cell cycle progression, but surprisingly Ncaph2 was dispensable for nuclear condensation. Genomic studies revealed that Ncaph2 occupied the promoter of key erythroid and cell cycle genes that were downregulated following Ncaph2 loss. Together, our results demonstrate an essential role for Ncaph2 in the gene expression programs that regulate cell cycle progression and erythroid differentiation, and identify a key role for the Condensin II complex in the regulation of a lineage-specific differentiation program. Summary StatementThe Condensin II complex regulates cell cycle progression and erythroid differentiation, but is dispensable for nuclear condensation during terminal erythroid maturation.

Source connections

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Abid, D., Murphy, K., Murphy, Z., Rahman, N., Getman, M., Steiner, L.. 2024-11-08. The Condensin II Complex Regulates the Expression of Essential Gene Expression Programs During Erythropoiesis. https://doi.org/10.1101/2024.11.05.621908

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Improved long-read sequencing technology reveals full genome architecture of Malian Plasmodium falciparum field isolates

Understanding genome plasticity in malaria parasites and the diversity of their repetitive gene families requires high-quality reference genomes derived from parasites recently isolated from patients. However, generating such genomes in Plasmodium falciparum remains challenging owing to the parasite's extreme AT content, extensive repetitive regions, and the frequent occurrence of multiclonal infections in endemic settings. As a result, most available reference genomes are derived from laboratory-adapted strains, that have experienced prolonged in vitro maintenance, and that incompletely represent natural parasite diversity. We developed and optimized a de novo assembly strategy based on PacBio HiFi long-read sequencing and applied it to eight recently-isolated and cloned P. falciparum parasites from Mali. HiFi sequencing enabled highly accurate genome reconstruction, yielding assemblies with a mean of 18 contigs, 301 pseudogenes, and a frameshift rate of 0.04% following Liftoff annotation. Assemblies showed high structural integrity and near-complete chromosomes, including improved recovery of subtelomeric regions and multigene families, without requiring short-read correction. Despite overall conservation of chromosome organization, substantial variation was observed in chromosome-end architecture, subtelomeric structure, and telomeric repeat content among parasite genomes. Our approach simplifies the generation of high-quality P. falciparum genomes and reduces sequencing requirements fourfold. The resulting assemblies enabled characterization of natural variation in telomere plasticity and multicopy gene family diversity in field isolates. These findings establish PacBio HiFi sequencing as an effective and scalable strategy for producing highly contiguous and accurate de novo assemblies of P. falciparum, supporting the development of geographically-diverse, field-relevant malaria parasite reference genomes.

genomics↗

Cell atlases of schistosome human infective stages reveal larval tissue fates and innovations

Schistosomes infect over 250 million people, yet the cellular basis of their human-infective cercaria larva, that drives transmission and infection, remains poorly understood. We present single-cell atlases of Schistosoma mansoni cercariae, widely regarded as transcriptionally quiescent, and schistosomula, the first intra-mammalian stage. Twenty-two cercarial cell types either persist into schistosomula or are lost. The tail harbours several cercaria-specific innovations, including a novel tegument. Gene-age analysis supports the cercaria as the most recent addition to the life cycle and tail cells as younger than body cells. Persisting cell types undergo clear transcriptional transitions which give new insights into the dynamics of cercarial transformation into schistosomula. These findings link the recent origin of cercarial cell types to the evolution of active dispersal and transmission in digenean parasites.

genomics↗

A genome-guided multilocus sequence analysis scheme to detect and resolve diversity within the X-disease phytoplasma group (16SrIII)

Phytoplasmas of the X-disease group (16SrIII) cause economically important diseases of vegetables, forage and staple crops, fruit trees and ornamentals in South America, where they are diagnosed and classified only by 16S rRNA gene RFLP. Because this gene is highly conserved, strains that differ in host range, vectors and regulatory relevance cannot be distinguished. We developed a multilocus sequence analysis (MLSA) scheme for typing 16SrIII phytoplasmas, using genome data to select the markers and to define reference lineages. Five single-copy loci (tuf, secA, secY, mutM, cimH) were chosen from 16 curated genomes; primers matched all genomes in silico, and four of the five pairs did not amplify phytoplasmas of other groups co-occurring in the region (16SrI, 16SrVII, 16SrXIII). Genome comparisons resolved four lineages, including one restricted to South America that shared only 90.8-93.9% average nucleotide identity with the other lineages, despite > 98.8% 16S rRNA identity. The concatenated MLSA (2,870 nt) reproduced the genome-based lineages and assigned five Argentinian field isolates from weeds, fodder beet, cassava, plum and a native shrub. Identical 16SrIII-B RFLP patterns occurred in different lineages, and one 16SrIII-B isolate grouped within the 16SrIII-J clade, showing that subgroups are not reliable proxies for lineages. The South American lineage had the broadest host range, spanning six plant families. We also detected chimeric rRNA copies and sequencing artefacts that can cause misclassification. This MLSA provides a PCR-based tool to identify 16SrIII lineages in crops, weeds and insects, supporting epidemiological studies, disease management and phytosanitary decisions.

genomics↗