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bioRxiv · 10.1101/2024.11.01.621557

Lineage Detector: Efficient Tool for Detecting New SARS-Cov-2 Lineages

Zou, X.
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Abstract

Since the novel virus of SARS-Cov-2s emergence, it continues to mutate at significant speed. The mutation speed and diversity of the virus has reached a level that is hard to be analysed purely via human tracing even with the help of UShER trees. We create an open-sourced tool of Lineage Detector, an automated tool that helps highlight the most important lineages of interest on Usher trees. Lineage Detector can highlight the most interesting SARS-CoV-2 branches for manual investigation and reduce the work of volunteer variant hunters to 8 [~] 10%, greatly improve their efficiency. Since its release, it has helped the identification, proposal and designation process of more than 100 SARS-CoV-2 variants.

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Zou, X.. 2024-11-04. Lineage Detector: Efficient Tool for Detecting New SARS-Cov-2 Lineages. https://doi.org/10.1101/2024.11.01.621557

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