ProFit-1D for quantifying J-difference edited data at 3T

Chan, K. L.; Borbath, T.; Sherlock, S.; Maher, E. A.; Patel, T.; Henning, A.

doi:10.1101/2024.10.07.616795

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bioRxiv · 10.1101/2024.10.07.616795

ProFit-1D for quantifying J-difference edited data at 3T

Chan, K. L.·Borbath, T.·Sherlock, S.·Maher, E. A.·Patel, T.·Henning, A.

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Abstract

Reproducible and accurate fitting of the magnetic resonance spectrum is critical for estimating metabolite concentrations. We have previously developed a fitting software called ProFit-1D which was shown to fit 9.4T semi-LASER data from the human brain with high accuracy and precision. In this study, we adapted ProFit-1D to fit J-difference edited spectra acquired at a clinical field strength of 3T and to assessed its performance in simulated and in vivo data. ProFit-1D was adapted to fit J-difference edited data with alterations to the fitting range to exclude the 1.3 ppm lipid resonance, starting T2 relaxation constants, initial fit parameters, and adaptive spectral baseline determination. The accuracy of ProFit-1D was systematically evaluated on simulated GABA-edited and 2-hydroxyglutarate-edited (2HG-edited) data with different types of in vivo parameter variations and compared to that of LCModel and Gannet, two software commonly used to fit J-difference edited data. The precision of ProFit-1D was also evaluated in GABA-edited spectra acquired in vivo in the occipital cortex (OCC) and medial prefrontal cortex (mPFC) of healthy participants at 3T using subsets of averages and compared to that of LCModel and Gannet. The 2HG fit error was also evaluated for ProFit-1D in 2HG-edited spectra acquired in glioma patients and compared to that of LCModel. Overall, it was found that ProFit-1D generally produced fits with low parameter fit errors across a variety of parameter variations. GABA, glutamate plus glutamine (Glx), and 2HG levels were also more accurately estimated with ProFit-1D than with LCModel and Gannet across different spectral disturbances and simulated concentrations. ProFit-1D was found to be as precise as LCModel and more precise than Gannet in estimating GABA and Glx. 2HG fit errors were 45% lower with ProFit-1D than with LCModel. Thus, ProFit-1D was found to produce high-quality fits to J- difference edited data with high accuracy and precision.

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Chan, K. L., Borbath, T., Sherlock, S., Maher, E. A., Patel, T., Henning, A.. 2024-10-11. ProFit-1D for quantifying J-difference edited data at 3T. https://doi.org/10.1101/2024.10.07.616795

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