Search bioRxiv⌕ Search

bioRxiv · 10.1101/2024.09.25.614826

A massive community-science flower color dataset reveals convergent evolution of delayed flowering phenology in North American red-flowering plants

Abstract

The radiation of angiosperms is marked by a phenomenal diversity of floral size, shape, color, scent, and reward. Through hundreds of years of documentation and quantification, scientists have sought to make sense of this variation by defining pollination syndromes. These syndromes are the convergent evolution of common suits of floral traits across distantly related species that have evolved by selection to optimize pollination strategies. The availability of community-science datasets provides an opportunity to develop new tools and to examine new traits that may help further characterize broad patterns of flowering plant diversity. Here we test the hypothesis that flowering phenology can also be a pollination syndrome trait. We generate a novel flower color dataset by using GPT-4 with Vision (GPT-4V) to assign flower color to 11,729 North American species. We map these colors to 1,674,908 community-scientist observations of flowering plants to investigate patterns of phenology. We demonstrate constrained flowering time in the eastern United States for plants with red or orange flowers relative to plants with flowers of other colors. Red-and orange-colored flowers are often characteristic of the "hummingbird" pollination syndrome; importantly, the onset of red and orange flowers corresponds to the arrival of migratory hummingbirds. Our results suggest that the hummingbird pollination syndrome can include flowering phenology and reveal an opportunity to expand the suite of traits included in pollination syndromes. Our methods demonstrate an effective pipeline for leveraging enormous amounts of community science data by using artificial intelligence to extract information about patterns of trait variation.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

McKenzie, P. F., Berardi, A. E., Hopkins, R.. 2024-09-27. A massive community-science flower color dataset reveals convergent evolution of delayed flowering phenology in North American red-flowering plants. https://doi.org/10.1101/2024.09.25.614826

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Evolutionary dynamics of RNA viruses during persistent infection in Drosophila melanogaster

Persistent viral infections provide an extended window for viral evolution, yet their intra-host trajectories across the host lifespan remain underexplored. Here, we tracked the longitudinal evolution of three single-stranded RNA (ssRNA) viruses (Drosophila A virus [DAV], Drosophila C virus [DCV], and Nora virus) and one double-stranded RNA (dsRNA) virus (Bloomfield virus) during persistent infection in Drosophila melanogaster. By analyzing viral populations across early, intermediate, and late infection stages, we mapped dynamic shifts in the viral quasispecies and the emergence of adaptive mutations. These data demonstrate that long-term persistence drives viral evolution in a viral species-specific manner. DAV evolution was defined by clonal interference, driven by the continuous turnover of competing haplotypes. Nora virus exhibited prolonged evolutionary stasis punctuated by a late-stage sweep, suggesting adaptation to the senescing host environment. In contrast, standard DCV populations were locked under strong purifying selection, where no adaptive mutations were detected. However, this constraint collapsed in high-titer DCV infections, triggering extensive mutational diversification. Distinct from the ssRNA dynamics, the multi-segmented dsRNA Bloomfield virus maintained higher sequence fidelity and a stable genomic formula. Ultimately, these results demonstrate that viral evolution during persistent infection is governed by the interplay between specific host-pathogen interactions and the physiological decline of the host.

evolutionary biology↗

A new cell type facilitated live-bearing and multiple independent origins of placentation in fish

The origin of new organs has fascinated biologists since Darwin. Yet the molecular and evolutionary steps that give rise to new organs remain difficult to resolve, largely because most organs have ancient origins. The fish family Poeciliidae offers a rare exception. Within poeciliids, placentas have independently evolved at least nine times, including within the last ~10 million years. Here, we study the molecular and cellular drivers of five independent origins of a placenta, using pairs of sister species with and without a placenta. We identified a new maternal cell type that emerged in the common ancestor of poeciliids and likely enabled the family to transition from egg-laying to live-bearing through egg retention. This new cell type originated by partly co-opting the existing gene regulatory network of another ovarian cell type. Subsequently, this same new maternal cell type, together with the embryonic yolk sac, was repeatedly and independently co-opted to form a placenta in all five origins. The evolution of these placentas involved high levels of convergence at the pathway level (e.g., lipid metabolism and vesicle-mediated transport), although these functional changes relied primarily on distinct genes across species. Our analyses show how the evolution and modification of a new cell type enabled the evolution of live birth and placentation, providing the cellular and genetic foundations for the repeated evolution of a new organ.

evolutionary biology↗

The extracellular morphology and behaviour of the last common ancestor of animals and choanoflagellates

Choanoflagellates, the closest known living relatives of animals, provide a powerful comparative system for investigating the evolution of extracellular morphology and cell behaviour on the animal stem lineage. Although all choanoflagellates share a conserved cellular architecture including a flagellum and collar of microvilli, they display a wide diversity of extracellular structures and behaviours throughout the life cycle. Their extracellular features, historically used for species identification, have long been suspected to reflect a mixture of evolutionary inheritance and ecological plasticity. Yet, the majority of choanoflagellate diversity remains undescribed, and the extent to which their extracellular traits map onto their phylogeny has remained unclear, impeding comparative reconstructions of the evolutionary history of extracellular structures with the earliest animals. Here, we integrate super-resolution fluorescence imaging, electron microscopy and transcriptomic analysis to characterize the extracellular structures and behaviours across both currently described lineages of choanoflagellates (Craspedida and Acanthoecida), by studying pairs of closely related species in conjunction with novel isolates representing previously unexplored clades. Our results reveal strong conservation of extracellular morphology between close relatives, whereas deeper evolutionary distances uncover unexpected innovations, such as sheath-like layers, bipartite thecae, crawling stages and atypical inverted division patterns. Furthermore, the inclusion of early-branching taxa sister to the loricates supports the hypothesis that the silicified extracellular lorica is a derived trait rather than an ancestral feature. Together, our findings suggest that the last choanoflagellate common ancestor possessed an organic non-silicified extracellular covering composed of one or more layers and that it was capable of both swimming and crawling behaviours, refining the cellular context from which animals evolved.

evolutionary biology↗