Transcriptome profiling of dopaminergic neurons derived from an ADHD induced pluripotent stem cell (iPSC) model

Namipashaki, A.; Arnatkeviciute, A.; Hellyer, S. D.; Nowell, C. J.; Walsh, K. S.; Polo, J. M.; Gregory, K. J.; Bellgrove, M. A.; Hawi, Z.

doi:10.1101/2024.09.22.614376

bioRxiv · 10.1101/2024.09.22.614376

Transcriptome profiling of dopaminergic neurons derived from an ADHD induced pluripotent stem cell (iPSC) model

Namipashaki, A.·Arnatkeviciute, A.·Hellyer, S. D.·Nowell, C. J.·Walsh, K. S.·Polo, J. M.·Gregory, K. J.·Bellgrove, M. A.·Hawi, Z.

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Abstract

The most recent ADHD-GWAS meta-analysis highlighted the potential role of 76 genes enriched among genes expressed in early brain development and associated with midbrain dopaminergic neurons. However, the precise functional importance of the GWAS-identified single nucleotide polymorphisms (SNPs) remain unknown. In contrast to GWAS, transcriptome analysis directly investigates gene products by assessing the transcribed RNA. This allows one to gain functional insights into gene expression paving the way for a better understanding of the molecular risk mechanisms of conditions, such as ADHD. In this study, we performed transcriptome profiling of highly homogeneous dopamine neurons developed from induced pluripotent cells (iPSCs) that were derived from an individual with ADHD and a neurotypical comparison individual. Comparative gene expression analysis between the examined lines revealed that the top differentially expressed genes (DEGs) were predominantly associated with nervous system functions related to neuronal development and dopaminergic regulation. Notably, 29 of the DEGs overlapped with those identified by ADHD-GWAS meta- analysis. These genes are overrepresented in biological processes including developmental growth regulation, axonogenesis, and nervous system development. In addition, gene set analysis revealed significant enrichment for meta categories such as ion channel activity, synaptic function and assembly, neuronal development and cell differentiation. Further, we observed significantly reduced projections in the ADHD dopamine neurons at the mid- differentiation stage (day 14 in vitro), providing preliminary support for the delayed neuronal maturation hypotheses of ADHD. This study underscores the potential of using iPSC-derived cell type-specific models that integrate genome and transcriptome analyses for biological discovery in ADHD.

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Namipashaki, A., Arnatkeviciute, A., Hellyer, S. D., Nowell, C. J., Walsh, K. S., Polo, J. M., Gregory, K. J., Bellgrove, M. A., Hawi, Z.. 2024-09-24. Transcriptome profiling of dopaminergic neurons derived from an ADHD induced pluripotent stem cell (iPSC) model. https://doi.org/10.1101/2024.09.22.614376

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