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bioRxiv · 10.1101/2024.09.20.614148

De novo assembly and annotation of the Empoasca fabae mitochondrial genome

Molligan, J.·Jacques, J.·Mukhopadhyay, S.·Perez-Lopez, E.
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Abstract

This study presents the assembly and annotation of the full-length mitochondrial genome for the leafhopper species Empoasca fabae Harris, 1841. The mitogenome was obtained from a contig-level assembly with the identified mitochondrial genome being 14,873 bp in length. The base composition was A (38.8%), T (39.1%), C (11.7%), and G (10.4%). The mitogenome comprised 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), two ribosomal RNA genes (rRNAs), and showed a unique, non-AT-rich D-loop region. Nearly all PCGs being with an ATN start codon, while two begin with TCG and GTG. Phylogenetic analysis confirmed the placement of E. fabae within the subfamily Typhlocybinae, clustering with other species in the Empoasca genus.

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Molligan, J., Jacques, J., Mukhopadhyay, S., Perez-Lopez, E.. 2024-09-24. De novo assembly and annotation of the Empoasca fabae mitochondrial genome. https://doi.org/10.1101/2024.09.20.614148

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