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bioRxiv · 10.1101/2024.07.18.604030

From spreadsheet lab data templates to knowledge graphs: A FAIR data journey in the domain of AMR research

Gadiya, Y.·Abbassi-Daloii, T.·Ioannidis, V.·Juty, N.·Stie Kallesoe, C.·Attwood, M.·Kohler, M.·Gribbon, P.·Witt, G.
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Abstract

While awareness of FAIR (Findable, Accessible, Interoperable, and Reusable) principles has expanded across diverse domains, there remains a notable absence of impactful narratives regarding the practical application of FAIR data. This gap is particularly evident in the context of in-vitro and in-vivo experimental studies associated with the drug discovery and development process. Despite the structured nature of these data, reliance on classic methods such as spreadsheet-based visualization and analysis has limited the long-term reuse opportunities for such datasets. In response to this challenge, our work presents a representative journey towards FAIR data, characterized by structured, conventional spreadsheet-based lab data templates and the adoption of a knowledge graph framework for breaking data silos in the field of early antimicrobial resistance research. Here, we illustrate a tailored application of a "FAIRification framework" facilitating the practical implementation of FAIR principles. By showcasing the feasibility and benefits of transitioning to FAIR data practices, our work aims to encourage broader adoption and integration of FAIR principles within a research lab setting.

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Gadiya, Y., Abbassi-Daloii, T., Ioannidis, V., Juty, N., Stie Kallesoe, C., Attwood, M., Kohler, M., Gribbon, P., Witt, G.. 2024-07-19. From spreadsheet lab data templates to knowledge graphs: A FAIR data journey in the domain of AMR research. https://doi.org/10.1101/2024.07.18.604030

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