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bioRxiv · 10.1101/2024.07.14.603477

Canonical time-series features for characterizing biologically informative dynamical patterns in fMRI

Alam, I.·Harris, B.·Cahill, P.·Cliff, O.·Markicevic, M.·Zerbi, V.·Fulcher, B. D.
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Abstract

The interdisciplinary time-series analysis literature encompasses thousands of statistical features for quantifying interpretable properties of dynamical data. But for any given application, it is likely that just a small subset of informative time-series features is required to capture the dynamical quantities of interest. So, while comprehensive libraries of time-series features have been developed, it is useful to construct reduced and computationally efficient subsets for specific applications. In this work, we demonstrate a systematic process to deduce such a reduced set, focused on the problem of distinguishing changes to functional Magnetic Resonance Imaging (fMRI) time series caused by a range of experimental manipulations of excitatory and inhibitory neural activity in mouse cortical circuits. We reduce a comprehensive library of over 7000 candidate time-series features down to a subset of 16 features, which we call catchaMouse16, that aims to both: (i) accurately characterize biologically relevant properties of fMRI time series; and (ii) minimize inter-feature redundancy. The catchaMouse16 feature set accurately classifies experimental perturbations of neuronal activity from fMRI recordings, and also shows strong generalization performance on an unseen mouse and human resting-state fMRI data where it tracks spatial variations in excitatory and inhibitory cortical cell densities, often with greater statistical power than the full hctsa feature set. We provide an efficient, open-source implementation of the catchaMouse16 feature set in C (achieving an approximately 60 times speed-up relative to the native Matlab code of the same features), with wrappers for Python and Matlab. This work demonstrates a procedure to reduce a large candidate time-series feature set down to the key statistical properties of mouse fMRI dynamics that can be used to efficiently quantify and interpret informative dynamical patterns in neural time series.

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Alam, I., Harris, B., Cahill, P., Cliff, O., Markicevic, M., Zerbi, V., Fulcher, B. D.. 2024-07-17. Canonical time-series features for characterizing biologically informative dynamical patterns in fMRI. https://doi.org/10.1101/2024.07.14.603477

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