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bioRxiv · 10.1101/2024.06.12.598609

High-order Michaelis-Menten equations allow inference of hidden kinetic parameters in enzyme catalysis

Singh, D.·Robin, T.·Urbakh, M.·Reuveni, S.
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Abstract

Single-molecule measurements provide a platform for investigating the dynamical properties of enzymatic reactions. To this end, the single-molecule Michaelis-Menten equation was instrumental as it asserts that the first moment of the enzymatic turnover time depends linearly on the reciprocal of the substrate concentration. This, in turn, provides robust and convenient means to determine the maximal turnover rate and the Michaelis-Menten constant. Yet, the information provided by these parameters is incomplete and does not allow full characterization of enzyme kinetics at the single molecule level. Here we show that the missing kinetic information can be accessed via a set of high-order Michaelis-Menten equations that we derive. These equations capture universal linear relations between the reciprocal of the substrate concentration and distinguished combinations of turnover time moments, essentially generalizing the Michaelis-Menten equation to moments of any order. We demonstrate how key observables such as the lifetime of the enzyme-substrate complex, the rate of substrate-enzyme binding, and the probability of successful product formation, can all be inferred using these high-order Michaelis-Menten equations.

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Singh, D., Robin, T., Urbakh, M., Reuveni, S.. 2024-06-14. High-order Michaelis-Menten equations allow inference of hidden kinetic parameters in enzyme catalysis. https://doi.org/10.1101/2024.06.12.598609

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