Fluorescein-Based SynNotch Adaptors for Regulating Gene Expression Responses to Diverse Extracellular Cues

Tran, J. C.; Kuffner, C. J.; Marzilli, A. M.; Miller, R. E.; Silfen, Z. E.; McMahan, J. B.; Sloas, D. C.; Chen, C. S.; Ngo, J. T.

doi:10.1101/2024.06.12.598538

bioRxiv · 10.1101/2024.06.12.598538

Fluorescein-Based SynNotch Adaptors for Regulating Gene Expression Responses to Diverse Extracellular Cues

Tran, J. C.·Kuffner, C. J.·Marzilli, A. M.·Miller, R. E.·Silfen, Z. E.·McMahan, J. B.·Sloas, D. C.·Chen, C. S.·Ngo, J. T.

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Abstract

We introduce an adaptor-based strategy for regulating fluorescein-binding synthetic Notch (SynNotch) receptors using ligands based on conjugates of fluorescein isomers and analogs. To develop a versatile system, we evaluated the surface expression and activities of multiple constructs containing distinct extracellular fluorescein-binding domains. Using an optimized receptor, we devised ways to regulate signaling via fluorescein-based chemical transformations, including an approach based on a bio-orthogonal chemical ligation and a spatially controllable strategy via the photo-patterned uncaging of an o-nitrobenzyl-caged fluorescein conjugate. We further demonstrate that fluorescein-conjugated extracellular matrix (ECM)-binding peptides can regulate SynNotch activity depending on the folding state of collagen-based ECM networks. Treatment with these conjugates enabled cells to distinguish between folded versus denatured collagen proteins and enact dose-dependent gene expression responses depending on the nature of the signaling adaptors presented. To demonstrate the utility of these tools, we applied them to control the myogenic conversion of fibroblasts into myocytes with spatial and temporal precision and in response to denatured collagen-I, a biomarker of multiple pathological states. Overall, we introduce an optimized fluorescein-binding SynNotch as a versatile tool for regulating transcriptional responses to extracellular ligands based on the widely used and clinically-approved fluorescein dye.

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Tran, J. C., Kuffner, C. J., Marzilli, A. M., Miller, R. E., Silfen, Z. E., McMahan, J. B., Sloas, D. C., Chen, C. S., Ngo, J. T.. 2024-06-12. Fluorescein-Based SynNotch Adaptors for Regulating Gene Expression Responses to Diverse Extracellular Cues. https://doi.org/10.1101/2024.06.12.598538

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