Search bioRxiv⌕ Search

bioRxiv · 10.1101/2024.06.06.597801

Shedding Light on H. pylori Detection: A Fusion Protein Approach Unveiled through LIPS Method

Abstract

The Luciferase Immunoprecipitation Systems (LIPS) method serves as a highly sensitive approach for quantitatively detecting antibodies to antigens, offering potential in identifying viral and bacterial infections. However, the substantial size of the luciferase-antigen fusion protein presents challenges in both production and folding. An alternative strategy employing epitopes rather than full length antigenic protein may circumvent issues associated with recombinant expression. Helicobacter pylori, a gram-negative bacterium, poses a risk of gastric cancer if untreated over time. This study focuses on the recombinant production of a fusion protein comprising in silico designed antigenic epitopes from the H. pylori urease protein and luciferase, aiming to reduce the fusion proteins size and thus augment its expression in the E. coli system. By employing bioinformatic analysis, sequences encoding the antigenic regions were pinpointed and subsequently amplified via PCR. A luciferase-linker-epitope construct was devised and constructed accordingly. The E. coli Bl21 (DE3) strain was utilized to express the recombinant chimeric protein, which was subsequently purified to achieve a state of homogeneity. The molecular weight of the fusion protein was estimated to be 75 kilodalton. Verification of the chimeric proteins proper folding and functionality was confirmed, as evidenced by a bioluminescence assay yielding an emission of 13.7 x 106 (RLU/s). Furthermore, western blot analysis authenticated the fusion proteins capability to bind specifically to H. pylori antibodies. These findings underscore the potential of the resultant protein as a promising candidate for H. pylori detection while also streamlining the recombinant production of LIPS fusion proteins. Key PointsO_LIEpitope-driven protein design boosts E. coli expression for LIPS advancement. C_LIO_LIImproved H. pylori detection aids early gastric cancer identification. C_LI

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Farzanfar, S. M., asad, s.. 2024-06-06. Shedding Light on H. pylori Detection: A Fusion Protein Approach Unveiled through LIPS Method. https://doi.org/10.1101/2024.06.06.597801

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Trans-branching of polyubiquitin chains orchestrates the DNA replication stress response

Polyubiquitin chain geometry dictates functional consequences of ubiquitylation. Although branched polyubiquitin chains are abundant in cells, little is known about their functions. Here we show that branching on the DNA replication factor PCNA, mediated by the ubiquitin-conjugating enzyme UBE2K and involving lysines 63 and 48 of ubiquitin, orchestrates the sequence of events in response to replication stress. By inducing VCP-dependent extraction of PCNA from chromatin, branching promotes re-priming of stalled forks and necessitates a BRCA1-dependent pathway of daughter-strand gap repair. Our study identifies hyper-accumulation of daughter-strand gaps as the mechanistic basis underlying the toxicity of inhibitors of the PCNA-specific isopeptidase, USP1, in BRCA1-deficient cells. Moreover, an unexpected preference of UBE2K to operate in trans suggests a general timing mechanism to organize hierarchies amongst ubiquitin signals.

molecular biology↗

Impaired proteostasis is an early feature of the diabetic heart in humans and mice

Diabetes and obesity increase cardiac lipid levels leading to cardiomyopathy and heart failure. We hypothesized that intermittent fasting would reduce cardiac lipid levels. Surprisingly, intermittent fasting increased myocardial triglyceride content, but rescued mortality and attenuated cardiomyopathy in mice overexpressing cardiomyocyte acyl-CoA synthetase 1 (MHC-ACSL1). Lipid overload caused cardiomyocyte accumulation of polyubiquitinated protein aggregates containing desmin, a scaffolding intermediate filament protein, which intermittent fasting prevented. Furthermore, intermittent fasting reversed elevated myocardial C16:0 ceramide content, and knockdown of ceramide synthase CerS5 and CerS6 reduced palmitate-induced protein aggregation, highlighting a role for C16:0 ceramides in this pathology. Conversely, impairing aggrephagy with cardiomyocyte-specific p62 ablation induced heart failure in mice fed a high-fat diet, with paradoxically reduced cardiac lipid content. Crucially, non-failing diabetic human hearts also exhibited protein aggregate pathology. Taken together, these results demonstrate that impaired proteostasis characterizes cardiomyopathy from cardiac lipid overload and identify a promising new therapeutic target for this condition.

molecular biology↗

Spatial profiling and neurovascular communication in the developing and adolescent cortex following prenatal alcohol exposure

Fetal alcohol spectrum disorders (FASD) constitute a wide range of developmental, cognitive, and behavioral impairments caused by prenatal alcohol exposure (PAE). Although neuronal and vascular consequences of PAE have been studied, how alcohol affects the cerebrovasculature within the framework of the neurovascular unit (NVU) across development remains poorly understood. At minimum, the NVU comprises neurons, astrocyte endfeet, and endothelial cells (ECs), which coordinate to maintain brain homeostasis. Here, we used the NanoString Digital Spatial Profiling platform to characterize spatial transcriptomic data from neurons, astrocytes, and ECs from PAE and saccharin (SAC) control cortices at embryonic day 18 (E18) and postnatal day 28 (P28). Differentially expressed genes were then used for Ingenuity Pathway Analysis (IPA) to identify altered biological pathways and perform comparison analyses across developmental time points, while CellChat was used to infer cell cell communication networks. We uncovered thousands of differentially expressed genes and numerous altered pathways and biological processes in PAE cortices across development. Both IPA and CellChat analyses implicated dysregulation of vascular and extracellular matrix (ECM) remodeling, cell adhesion, and neuroinflammatory signaling. CellChat further predicted the loss of several key bidirectional relationships and altered ligand-receptor interactions among neurovascular cell types at E18 and P28. Overall, these findings identify PAE associated alterations in neurovascular gene expression and intercellular signaling across development, providing potential mechanisms by which PAE may disrupt neurodevelopment.

molecular biology↗