Search bioRxiv⌕ Search

bioRxiv · 10.1101/2024.05.03.592334

CUAD biotechnology offers 0.5 USD per hectare for aphid control: innovative platform for low-cost plant protection

Abstract

20 years ago it was difficult to imagine the use of nucleic acids in plant protection as insecticides, but today it is a reality. At the very beginning, new technologies often work inefficiently and are expensive; in the process of their development, qualitative changes occur that make new technologies accessible and work flawlessly. Invented in 2008, oligonucleotide insecticides based on CUAD (contact unmodified antisense DNA) platform have been improved and today possess characteristics that amaze the imagination: low carbon footprint, high safety for non-target organisms, rapid biodegradability in ecosystems, avoidance of target-site resistance. This next generation class of insecticides creates opportunities to develop insecticides which are well-tailored for a particular population of insect pest. CUAD biotechnology combines the achievements of molecular genetics, bioinformatics, and in vitro nucleic acid synthesis providing a simple and flexible platform for plant protection. Aphids, as one of the key pests of important agricultural crops that shape food security, can be controlled by oligonucleotide insecticides at affordable price already today, ensuring effective control with minimal risks for the environment. In this article, low-dose concentration (0.1 ng/{micro}L; 20 mg per hectare in 200 L of water solution) of 11-nt long oligonucleotide insecticide Schip-11 shows effectiveness on aphid Schizolachnus pineti causing 76.06 {+/-} 7.68 mortality rate on the 12th day (p<0.05). At a consumption rate of 200 L per hectare, the price of the required amount of oligonucleotide insecticide will be about 0.5 USD/ha using liquid-phase DNA synthesis and makes oligonucleotide insecticides very competitive on the market. Also we show that non-canonical base pairing G:T (T:G) between target pre-rRNA and olinscide is well tolerated in aphids. Thus, non-canonical base-pairing should be taken into consideration during design of olinscides not to harm non-target organisms.

Explore related subjects

Keep this discovery

Explore connections, maps & timelines

BibTeXRIS

Oberemok, V. V., Puzanova, Y. V., Gal'chinsky, N. V.. 2024-05-03. CUAD biotechnology offers 0.5 USD per hectare for aphid control: innovative platform for low-cost plant protection. https://doi.org/10.1101/2024.05.03.592334

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related preprints

Trans-branching of polyubiquitin chains orchestrates the DNA replication stress response

Polyubiquitin chain geometry dictates functional consequences of ubiquitylation. Although branched polyubiquitin chains are abundant in cells, little is known about their functions. Here we show that branching on the DNA replication factor PCNA, mediated by the ubiquitin-conjugating enzyme UBE2K and involving lysines 63 and 48 of ubiquitin, orchestrates the sequence of events in response to replication stress. By inducing VCP-dependent extraction of PCNA from chromatin, branching promotes re-priming of stalled forks and necessitates a BRCA1-dependent pathway of daughter-strand gap repair. Our study identifies hyper-accumulation of daughter-strand gaps as the mechanistic basis underlying the toxicity of inhibitors of the PCNA-specific isopeptidase, USP1, in BRCA1-deficient cells. Moreover, an unexpected preference of UBE2K to operate in trans suggests a general timing mechanism to organize hierarchies amongst ubiquitin signals.

molecular biology↗

Impaired proteostasis is an early feature of the diabetic heart in humans and mice

Diabetes and obesity increase cardiac lipid levels leading to cardiomyopathy and heart failure. We hypothesized that intermittent fasting would reduce cardiac lipid levels. Surprisingly, intermittent fasting increased myocardial triglyceride content, but rescued mortality and attenuated cardiomyopathy in mice overexpressing cardiomyocyte acyl-CoA synthetase 1 (MHC-ACSL1). Lipid overload caused cardiomyocyte accumulation of polyubiquitinated protein aggregates containing desmin, a scaffolding intermediate filament protein, which intermittent fasting prevented. Furthermore, intermittent fasting reversed elevated myocardial C16:0 ceramide content, and knockdown of ceramide synthase CerS5 and CerS6 reduced palmitate-induced protein aggregation, highlighting a role for C16:0 ceramides in this pathology. Conversely, impairing aggrephagy with cardiomyocyte-specific p62 ablation induced heart failure in mice fed a high-fat diet, with paradoxically reduced cardiac lipid content. Crucially, non-failing diabetic human hearts also exhibited protein aggregate pathology. Taken together, these results demonstrate that impaired proteostasis characterizes cardiomyopathy from cardiac lipid overload and identify a promising new therapeutic target for this condition.

molecular biology↗

Spatial profiling and neurovascular communication in the developing and adolescent cortex following prenatal alcohol exposure

Fetal alcohol spectrum disorders (FASD) constitute a wide range of developmental, cognitive, and behavioral impairments caused by prenatal alcohol exposure (PAE). Although neuronal and vascular consequences of PAE have been studied, how alcohol affects the cerebrovasculature within the framework of the neurovascular unit (NVU) across development remains poorly understood. At minimum, the NVU comprises neurons, astrocyte endfeet, and endothelial cells (ECs), which coordinate to maintain brain homeostasis. Here, we used the NanoString Digital Spatial Profiling platform to characterize spatial transcriptomic data from neurons, astrocytes, and ECs from PAE and saccharin (SAC) control cortices at embryonic day 18 (E18) and postnatal day 28 (P28). Differentially expressed genes were then used for Ingenuity Pathway Analysis (IPA) to identify altered biological pathways and perform comparison analyses across developmental time points, while CellChat was used to infer cell cell communication networks. We uncovered thousands of differentially expressed genes and numerous altered pathways and biological processes in PAE cortices across development. Both IPA and CellChat analyses implicated dysregulation of vascular and extracellular matrix (ECM) remodeling, cell adhesion, and neuroinflammatory signaling. CellChat further predicted the loss of several key bidirectional relationships and altered ligand-receptor interactions among neurovascular cell types at E18 and P28. Overall, these findings identify PAE associated alterations in neurovascular gene expression and intercellular signaling across development, providing potential mechanisms by which PAE may disrupt neurodevelopment.

molecular biology↗