Functional selection in SH3-mediated activation of the PI3 kinase

Aljedani, S. S.; Aldehaiman, A.; Sandholu, A.; Alharb, S.; Mak, V. C. Y.; Wu, H.; Lugari, A.; Jaremko, M.; Morelli, X.; Backer, J.; Ladbury, J. E.; Nowakowski, M.; Cheung, L. W. T.; Arold, S. T.

doi:10.1101/2024.04.30.591319

bioRxiv · 10.1101/2024.04.30.591319

Functional selection in SH3-mediated activation of the PI3 kinase

Aljedani, S. S.·Aldehaiman, A.·Sandholu, A.·Alharb, S.·Mak, V. C. Y.·Wu, H.·Lugari, A.·Jaremko, M.·Morelli, X.·Backer, J.·Ladbury, J. E.·Nowakowski, M.·Cheung, L. W. T.·Arold, S. T.

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Abstract

The phosphoinositide-3 kinase (PI3K), a heterodimeric enzyme, plays a pivotal role in cellular metabolism and survival. Its deregulation is associated with major human diseases, particularly cancer. The p85 regulatory subunit of PI3K binds to the catalytic p110 subunit via its C-terminal domains, stabilising it in an inhibited state. Certain Src homology 3 (SH3) domains can activate p110 by binding to the proline-rich (PR) 1 motif located at the N-terminus of p85. However, the mechanism by which this N-terminal interaction activates the C-terminally bound p110 remains elusive. Moreover, the intrinsically poor ligand selectivity of SH3 domains raises the question of how they can control PI3K. Combining structural, biophysical, and functional methods, we demonstrate that the answers to both these unknown issues are linked: PI3K-activating SH3 domains engage in additional "tertiary" interactions with the C-terminal domains of p85, thereby relieving their inhibition of p110. SH3 domains lacking these tertiary interactions may still bind to p85 but cannot activate PI3K. Thus, p85 uses a functional selection mechanism that precludes nonspecific activation rather than nonspecific binding. This separation of binding and activation may provide a general mechanism for how biological activities can be controlled by promiscuous protein-protein interaction domains.

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Aljedani, S. S., Aldehaiman, A., Sandholu, A., Alharb, S., Mak, V. C. Y., Wu, H., Lugari, A., Jaremko, M., Morelli, X., Backer, J., Ladbury, J. E., Nowakowski, M., Cheung, L. W. T., Arold, S. T.. 2024-04-30. Functional selection in SH3-mediated activation of the PI3 kinase. https://doi.org/10.1101/2024.04.30.591319

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