Vesicle-mediated mitochondrial clearance underlies an actionable metabolic vulnerability in triple-negative breast cancer

Vykoukal, J.; Chen, Y.; Hong, M. J.; Zuo, M.; Krishna, H.; Katayama, H.; Irajizad, E.; Wu, R.; Leon-Letelier, R.; Dennison, J. B.; Gutierrez, A.; Paulucci-Holthauzen, A.; Thompson, T. C.; Rusling, L.; Cai, Y.; Hsiao, F. C.; Park, S.; Arun, B.; Hanash, S.; Fahrmann, J. F.

doi:10.1101/2024.04.04.587899

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bioRxiv · 10.1101/2024.04.04.587899

Vesicle-mediated mitochondrial clearance underlies an actionable metabolic vulnerability in triple-negative breast cancer

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Abstract

Selective autophagy of mitochondria is known to promote survival and progression of cancer cells in various malignancies including triple-negative breast cancer (TNBC). Here, we aimed to identify the essential metabolic adaptations that support mitochondrial quality control with the goal to uncover actionable metabolic vulnerabilities with therapeutic potential. Using an integrated approach of proteomics and untargeted and stable-isotope resolved metabolomics, coupled with functional experimental analyses, we define an alternative mechanism to mitophagy enabled by an onco-metabolic program of heightened extracellular sphingomyelin salvaging in TNBC that facilitates extracellular vesicle (EV)-mediated intracellular clearance of mitochondrial damage. Targeting of the cancer cell sphingolipid onco-metabolic pathway via repurposing of eliglustat, a selective small molecule inhibitor of glucosylceramide synthase (UGCG), resulted in ceramide-induced lethal mitophagy and attenuated tumor growth and prolonged overall survival at clinically achievable doses in an orthotopic syngeneic mouse model of TNBC. Our study defines a mechanism of aberrant sphingolipid metabolism that underlies an actionable metabolic vulnerability for anti-cancer treatment.

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Vykoukal, J., Chen, Y., Hong, M. J., Zuo, M., Krishna, H., Katayama, H., Irajizad, E., Wu, R., Leon-Letelier, R., Dennison, J. B., Gutierrez, A., Paulucci-Holthauzen, A., Thompson, T. C., Rusling, L., Cai, Y., Hsiao, F. C., Park, S., Arun, B., Hanash, S., Fahrmann, J. F.. 2024-04-04. Vesicle-mediated mitochondrial clearance underlies an actionable metabolic vulnerability in triple-negative breast cancer. https://doi.org/10.1101/2024.04.04.587899

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