Genetic polymorphisms of Leukocyte Immunoglobulin-Like Receptor B3 (LILRB3) gene in African American kidney transplant recipients are associated with post-transplant graft failure

Sun, Z.; Yi, Z.; Wei, C.; Wang, W.; Cravedi, P.; Tedla, F.; Ward, S. C.; Azeloglu, E.; Schrider, D. R.; Li, Y.; Ali, S.; Ren, T.; Liu, S.; Liang, D.; Fu, J.; Liu, T.; Li, H.; Xi, C.; Vy, T. H.; Mosoyan, G.; Sun, Q.; Kumar, A.; Zhang, Z.; Farouk, S.; Campbell, K.; Ochando, J.; Lee, K.; Coca, S.; Xiang, J.; Connolly, P.; Gallon, L.; Colvin, R.; Menon, M.; Nadkarni, G.; He, J. C.; Kraft, M.; Jiang, X.; Zhang, X.; Zhang, W.; Chen, S.-h.; Heeger, P.

doi:10.1101/2024.02.21.581383

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bioRxiv · 10.1101/2024.02.21.581383

Genetic polymorphisms of Leukocyte Immunoglobulin-Like Receptor B3 (LILRB3) gene in African American kidney transplant recipients are associated with post-transplant graft failure

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Abstract

BackgroundAfrican American (AA) kidney transplant recipients exhibit a higher rate of graft loss compared to other racial and ethnic populations, highlighting the need to identify causative factors underlying this disparity. MethodWe analyzed RNA sequences of pretransplant whole blood from subjects followed in three kidney transplant cohorts to identify single nucleotide polymorphisms (SNPs) associated with death censored graft loss (DCGL). We employed a meta-analysis to uncover key transcriptional signatures and pathways associated with the identified SNPs and used single cell RNA to define cellular specificity. We characterized SNP functions using in vitro immunological and survival assays and tested for associations between the identified SNPs and other immune-related diseases using a [~]30,100 subject, electronic health record (EHR)-linked database. ResultsWe uncovered a cluster of four consecutive missense SNPs in the Leukocyte Immunoglobulin-Like Receptor B3 (LILRB3, a negative immune response regulator) gene that strongly associated with DCGL. This LILRB3-4SNPs cluster encodes missense mutations at amino acids 617-618 proximal to a SHP-1/2 phosphatase-binding ITIM motif. LILRB3-4SNPs is specifically enriched within subjects of AA ancestry (8.6% prevalence vs 2.3% in Hispanic and 0.1% in European populations), is not linked to APOL1 G1/G2 alleles, and exhibited a strong association with DCGL. Analysis of PBMC and transplant biopsies from recipients with LILRB3-4SNPs showed evidence of enhanced adaptive immune responsiveness and ferroptosis-associated death in monocytes. Overexpression of the variant allele in THP-1 cells (macrophage line) induced augmented inflammation and ferroptosis, which were attenuated by a ferroptosis inhibitor, verifying a causal link. The LILRB3-4SNPs also associated with multiple systemic and organ-specific immune-related diseases in AAs, consistent with conferring a broadly relevant immune function. Conclusionthe LILRB3-4SNPs represent a functionally important, distinct genetic risk factor for kidney transplant outcome and development/severity of other immune-related diseases in patients of AA ancestry. Pharmacological targeting of ferroptosis should be tested to prevent or treat these disease processes in AA recipients carrying LILRB3-4SNPs.

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Sun, Z., Yi, Z., Wei, C., Wang, W., Cravedi, P., Tedla, F., Ward, S. C., Azeloglu, E., Schrider, D. R., Li, Y., Ali, S., Ren, T., Liu, S., Liang, D., Fu, J., Liu, T., Li, H., Xi, C., Vy, T. H., Mosoyan, G., Sun, Q., Kumar, A., Zhang, Z., Farouk, S., Campbell, K., Ochando, J., Lee, K., Coca, S., Xiang, J., Connolly, P., Gallon, L., Colvin, R., Menon, M., Nadkarni, G., He, J. C., Kraft, M., Jiang, X., Zhang, X., Zhang, W., Chen, S.-h., Heeger, P.. 2024-02-23. Genetic polymorphisms of Leukocyte Immunoglobulin-Like Receptor B3 (LILRB3) gene in African American kidney transplant recipients are associated with post-transplant graft failure. https://doi.org/10.1101/2024.02.21.581383

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