Fertilization by short-term stored sperm alters DNA methylation patterns in common carp (Cyprinus carpio) embryos at single-base resolution

Cheng, Y.; Zhang, S.; Nayak, R.; Vechtova, P.; Schumacher, F.; Linhartova, P.; Gazo, I.; Linhartova, Z.; Waghmare, S. G.; Kleuser, B.; Dey, A.; Rodinova, V.; Rodina, M.; Sterba, J.; Alavi, S. M. H.; Labbe, C.; Linhart, O.

doi:10.1101/2024.02.18.580899

bioRxiv · 10.1101/2024.02.18.580899

Fertilization by short-term stored sperm alters DNA methylation patterns in common carp (Cyprinus carpio) embryos at single-base resolution

Cheng, Y.·Zhang, S.·Nayak, R.·Vechtova, P.·Schumacher, F.·Linhartova, P.·Gazo, I.·Linhartova, Z.·Waghmare, S. G.·Kleuser, B.·Dey, A.·Rodinova, V.·Rodina, M.·Sterba, J.·Alavi, S. M. H.·Labbe, C.·Linhart, O.

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Abstract

Short-term storage of sperm in vitro is widely used for artificial fertilization in aquaculture. It has been shown that short-term storage affects sperm motility characteristics, resulting in diminished fertility. However, the detrimental effects of short-term sperm storage on embryos development have remained largely unexplored in single-base methylome resolution. The main aim of the present study was to investigate DNA methylation in the offspring of common carp (Cyprinus carpio) derived from short-term stored sperm. Sperm were stored in artificial seminal plasma on ice (0-2{degrees}C) for 0, 3 and 6 days in vitro, fertilization was performed using oocytes from a single female, and embryos were collected at the mid-blastula stage. Sperm and embryo DNA was extracted, analysed by liquid chromatography with tandem mass spectrometry (LC-MS/MS) and whole genome bisulfite sequencing (WGBS). DNA methylation was then assessed. Sperm storage showed negative effects on motility, viability and DNA integrity, but had no effect on global DNA methylation of spermatozoa and resulting embryos. Results from the WGBS showed that methylation of 3313 genes was affected in the embryos fertilized with the 6-day-stored sperm, and the differentially methylated regions (DMRs) identified were mainly involved in cell adhesion, calcium, mitogen-activated protein kinase and adrenergic signalling, melanogenesis, metabolism and RNA transport. Such results suggest that prolongation of storage time may have certain impacts on embryonic development. These initial results provide valuable information for future consideration of the DNA methylome in embryos generated from short-term stored sperm, which is widely used for genetic management of broodstock in aquaculture.

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Cheng, Y., Zhang, S., Nayak, R., Vechtova, P., Schumacher, F., Linhartova, P., Gazo, I., Linhartova, Z., Waghmare, S. G., Kleuser, B., Dey, A., Rodinova, V., Rodina, M., Sterba, J., Alavi, S. M. H., Labbe, C., Linhart, O.. 2024-02-18. Fertilization by short-term stored sperm alters DNA methylation patterns in common carp (Cyprinus carpio) embryos at single-base resolution. https://doi.org/10.1101/2024.02.18.580899

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