Integrated Short-TE and Hadamard-edited Multi-Sequence (ISTHMUS) for Advanced MRS

Hui, S. C. N.; Murali-Manohar, S.; Zollner, H. J.; Hupfeld, K. E.; Davies-Jenkins, C. W.; Gudmundson, A. T.; Song, Y.; Yedavalli, V.; Wisnowski, J. L.; Gagoski, B.; Oeltzschner, G.; Edden, R. A. E.

doi:10.1101/2024.02.15.580516

bioRxiv · 10.1101/2024.02.15.580516

Integrated Short-TE and Hadamard-edited Multi-Sequence (ISTHMUS) for Advanced MRS

Hui, S. C. N.·Murali-Manohar, S.·Zollner, H. J.·Hupfeld, K. E.·Davies-Jenkins, C. W.·Gudmundson, A. T.·Song, Y.·Yedavalli, V.·Wisnowski, J. L.·Gagoski, B.·Oeltzschner, G.·Edden, R. A. E.

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Abstract

BackgroundTo examine data quality and reproducibility using ISTHMUS, which has been implemented as the standardized MR spectroscopy sequence for the multi-site Healthy Brain and Child Development (HBCD) study. MethodsISTHMUS is the consecutive acquisition of short-TE PRESS (32 transients) and long-TE HERCULES (224 transients) data with dual-TE water reference scans. Voxels were positioned in the centrum semiovale, dorsal anterior cingulate cortex, posterior cingulate cortex and bilateral thalamus regions. After acquisition, ISTHMUS data were separated into the PRESS and HERCULES portions for analysis and modeled separately using Osprey. In vivo experiments were performed in 10 healthy volunteers (6 female; 29.5{+/-}6.6 years). Each volunteer underwent two scans on the same day. Differences in metabolite measurements were examined. T2 correction based on the dual-TE water integrals were compared with: 1) T2 correction based the default white matter and gray matter T2 reference values in Osprey; 2) shorter WM and GM T2 values from recent literature; and 3) reduced CSF fractions. ResultsNo significant difference in linewidth was observed between PRESS and HERCULES. Bilateral thalamus spectra had produced significantly higher (p<0.001) linewidth compared to the other three regions. Linewidth measurements were similar between scans, with scan-to-scan differences under 1 Hz for most subjects. Paired t-tests indicated a significant difference only in PRESS NAAG between the two thalamus scans (p=0.002). T2 correction based on shorter T2 values showed better agreement to the dual-TE water integral ratio. ConclusionsISTHMUS facilitated and standardized acquisition and post-processing and reduced operator workload to eliminate potential human error. HighlightsO_LIISTHMUS has been implemented into the HBCD study protocol. C_LIO_LIIt acquires both short-TE and Hadamard-edited transients. C_LIO_LIISTHMUS reduces operator workload. C_LIO_LIISTHMUS potentially allows improved T2 relaxation correction C_LI

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Hui, S. C. N., Murali-Manohar, S., Zollner, H. J., Hupfeld, K. E., Davies-Jenkins, C. W., Gudmundson, A. T., Song, Y., Yedavalli, V., Wisnowski, J. L., Gagoski, B., Oeltzschner, G., Edden, R. A. E.. 2024-02-20. Integrated Short-TE and Hadamard-edited Multi-Sequence (ISTHMUS) for Advanced MRS. https://doi.org/10.1101/2024.02.15.580516

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