TSC22D, WNK and NRBP gene families exhibit functional buffering and evolved with Metazoa for macromolecular crowd sensing

Xiao, Y.-X.; Lee, S. Y.; Uribe, M. A.; Samson, R.; Au, A.; Yukti, K.; Liu, Z.; Cheng, R.; Aulakh, K.; Wei, J.; Farias, A. G.; Reilly, T.; Habsid, A.; Brown, K.; Chan, K.; Mero, P.; Huang, J. Q.; Billmann, M.; Rahman, M.; Myers, C.; Andrews, B.; Youn, J.-Y.; Yip, C.; Rotin, D.; Derry, B.; Forman-Kay, J.; moses, a.; Iva, P.; Gingras, A. C.; Moffat, J.

doi:10.1101/2024.02.13.579840

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bioRxiv · 10.1101/2024.02.13.579840

TSC22D, WNK and NRBP gene families exhibit functional buffering and evolved with Metazoa for macromolecular crowd sensing

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Abstract

The ability to sense and respond to osmotic fluctuations is critical for the maintenance of cellular integrity. Myriad redundancies have evolved across all facets of osmosensing in metazoans, including among water and ion transporters, regulators of cellular morphology, and macromolecular crowding sensors, hampering efforts to gain a clear understanding of how cells respond to rapid water loss. In this study, we harness the power of gene co-essentiality analysis and genome-scale CRISPR-Cas9 screening to identify an unappreciated relationship between TSC22D2, WNK1 and NRBP1 in regulating cell volume homeostasis. Each of these genes have paralogs and are functionally buffered for macromolecular crowd sensing and cell volume control. Within seconds of hyperosmotic stress, TSC22D, WNK and NRBP family members physically associate into cytoplasmic biocondensates, a process that is dependent on intrinsically disordered regions (IDRs). A close examination of these protein families across metazoans reveals that TSC22D genes evolved alongside a domain in NRBPs that specifically binds to TSC22D proteins, which we have termed NbrT (NRBP binding region with TSC22D), and this co-evolution is concomitant with rapid IDR length expansion in WNK family kinases. Our study identifies functions for unrecognized components of the cell volume sensing machinery and reveals that TSC22D, WNK and NRBP genes evolved as cytoplasmic crowding sensors in metazoans to co-regulate rapid cell volume changes in response to osmolarity.

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Xiao, Y.-X., Lee, S. Y., Uribe, M. A., Samson, R., Au, A., Yukti, K., Liu, Z., Cheng, R., Aulakh, K., Wei, J., Farias, A. G., Reilly, T., Habsid, A., Brown, K., Chan, K., Mero, P., Huang, J. Q., Billmann, M., Rahman, M., Myers, C., Andrews, B., Youn, J.-Y., Yip, C., Rotin, D., Derry, B., Forman-Kay, J., moses, a., Iva, P., Gingras, A. C., Moffat, J.. 2024-02-15. TSC22D, WNK and NRBP gene families exhibit functional buffering and evolved with Metazoa for macromolecular crowd sensing. https://doi.org/10.1101/2024.02.13.579840

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